Corynebacterium atrinae: CATRI_01880
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Entry
CATRI_01880 CDS
T09346
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CATRI_01880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
catr03021
]
CATRI_01880 (rpoB)
03400 DNA repair and recombination proteins [BR:
catr03400
]
CATRI_01880 (rpoB)
Enzymes [BR:
catr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CATRI_01880 (rpoB)
Transcription machinery [BR:
catr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CATRI_01880 (rpoB)
DNA repair and recombination proteins [BR:
catr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CATRI_01880 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WJY62481
LinkDB
All DBs
Position
369881..373444
Genome browser
AA seq
1187 aa
AA seq
DB search
MLILPADSTIVSQSSRHPREVLEGPILAVSRQTKSVTDIPGAPKRYSFAKISAPIEVPGL
LDLQRESFAWLIGTPEWRARHQEERGPEARLTSGLEDILDELSPIQDYSENMSLSLSEPR
FEPVKNSIDECKDKDINYSAPLYVTAEFINNETQEIKSQTVFIGDFPMMTPKGTFIVNGT
ERVVVSQLVRSPGVYFDQTIDKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRR
QPVTVLLKALGWTTEQIQERFGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDL
ARSLLDNSFFRAKRYDLAKVGRYKVNRKLGLGGDHDGLMTLTEEDIATTLEYLVRLHVGE
RSMTSPTGEIIPVETDDIDHFGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESI
TPTSLINVRPVSAAIREFFGTSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEV
RDVHPSHYGRMCPIETPEGPNIGLIGSLASYARVNAFGFIETPYLKVVDGRVTDIVEYLT
ADEEDRYAIAQASIERDADGVITADRIEVRLKDGAIGVVTDGYGVDYIDVSPRQMVSVAT
AMIPFLEHDDANRALMGANMQRQAVPLVRAEAPYVGTGMEKRAAYDAGDMVITPKAGVVE
NVSADVITIMDDEGIRDTYLLRKFERTNQGTSYNQTPLVNMGDRVEAGQVIADGPGTHNG
EMSLGRNLLVAFMPWEGHNYEDAIILNQRVVEEDILTSIHIEEHEIDARDTKLGAEEITR
EIPNVSEDVLRDLDDRGIVRIGADVRAGDILVGKVTPKGETELTPEERLLRAIFGEKARE
VRDTSMKVPHGENGKVIGVRRFAREDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGN
KGVVGKILPPEDMPFMADGTPVDIILNTHGVPRRMNIGQVLEIHLGWLAAAGWSVDPEDP
KNAELIKTLPEELYDVPAGSLTATPVFDGATNEELSGLLANSRPNRDGDVMVDETGKTML
LDGRSGEPFPYPVSVGYMYLLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGE
MEVWAMQAYGAAYTLQELLTIKSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQS
LCLNVEVLSADGTPMELSGSDDDELDSAGSSLGINLSHDERSDADVS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgctaattttaccagcggattcgacgattgttagccagagcagtcgccacccgcgtgag
gtgctggaaggacccatcttggcagtctcccgccagaccaagtcagtgaccgacattccc
ggagccccgaagcgatattctttcgctaagatctccgcgcccatcgaagttccgggtctt
cttgacctgcagcgtgaatccttcgcgtggctgattggcacgcccgagtggcgtgcccgc
catcaggaggagcgtgggccggaagcccgcttgaccagtggactcgaggatattcttgac
gagttgtcgccgattcaggactactccgagaatatgtcgttgtcgctgtctgagccgcgc
ttcgagccggtgaagaactctattgatgagtgcaaggacaaagatattaactactctgcg
ccgctgtatgtgacggcagagttcattaacaatgaaacccaagagatcaagtctcagacg
gtgttcattggtgatttcccgatgatgacgccgaagggcacgttcatcgtcaacggcacc
gagcgtgtcgtggtctctcagctcgtccgttccccgggcgtctacttcgaccagacgatt
gataagtccacggagcgaccgctgcactctgtgaaggtgattccttcccgcggtgcgtgg
ctcgaattcgacgtcgataagcgagacaccgtaggtgtccgtattgaccgtaagcgtcgc
cagccggtgacggtgctgctcaaggcccttggttggaccactgagcagattcaggagcga
ttcggtttctccgagatcatgatgtccaccctcgagtctgatggtgtggccaacaccgat
gaggctttgctggagatctaccgcaagcagcgtccgggcgagcagcccacgcgcgacctt
gctcgttccctgctggacaactctttcttccgtgcgaagcgctacgacttggccaaggtg
ggccgctacaaggtcaaccgcaagctcggcctcggcggcgaccacgacggtctgatgacg
ctgaccgaagaggacattgccaccaccctggagtacctcgttcgcctgcacgtcggcgag
cgttccatgacctccccgaccggcgagatcattccggtggagaccgacgacattgaccac
tttggtaaccgtcgtctgcgcaccgtcggtgagctgattcaaaaccaggtccgcgttggc
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacgctgagtcgatc
accccgacctcgctgatcaacgtccgtccggtctcggccgcgatccgtgagttctttggt
acctcccagctgtcccagttcatggaccagaacaactcgctgtcgggcctgacccacaag
cgtcgtctgtccgcactgggcccgggtggtctctcccgtgagcgcgccggcattgaggtc
cgcgacgttcacccgtctcactacggccgcatgtgcccgattgagaccccggaaggcccg
aacattggcctcatcggttcgctcgcgtcctacgcccgggtgaatgctttcggtttcatt
gagaccccgtacctgaaggtcgttgacggccgagtgaccgacattgtcgagtacctcacc
gccgacgaggaggatcgctacgccattgcgcaggcctccatcgagcgcgacgctgacggc
gtcatcaccgctgaccgcattgaggttcgcctcaaggacggcgccatcggcgtggtcacc
gacggttacggtgtggactacattgacgtgtccccgcgccagatggtctccgtcgctacc
gcgatgattccgttcctcgagcacgacgatgctaaccgtgccctcatgggtgcgaacatg
cagcgtcaggctgtgccgctggtccgcgccgaggccccgtacgtgggcaccggcatggaa
aagcgcgctgcttacgatgctggcgatatggtcatcaccccgaaggctggcgtggtggag
aatgtctcggctgacgtcatcaccatcatggacgatgagggcatccgcgacacctacctg
ctgcgcaagttcgagcgcaccaaccagggcacgagctacaaccagacccctctggtcaac
atgggcgatcgcgtcgaggccggtcaggttatcgccgacggccccggtacccacaacggt
gaaatgtccctcggccgcaacctcctggttgcgttcatgccgtgggaaggccacaactac
gaggacgcgatcatcctcaaccagcgtgtggtggaagaggacatcctcacttccatccac
atcgaggagcacgagatcgatgcccgcgacaccaagctcggtgccgaggagatcacccgt
gagatcccgaacgtctccgaagatgtcctgcgcgacctcgacgaccgcggcatcgtccgc
atcggcgccgacgttcgcgctggcgacatcctcgtcggcaaggtcaccccgaagggtgag
accgaactgaccccggaggagcgtttgcttcgcgccatcttcggcgagaaggcccgcgag
gtccgcgacacctccatgaaggtgccgcacggcgaaaacggcaaggtcattggtgtgcgt
cgcttcgcccgcgaggacgacgacgatctggctccgggtgtcaacgagatgatccgcgtc
tacgtggcccagaagcgcaagatccaggacggcgataagctcgccggccgccacggcaac
aagggcgtcgtgggcaagatcctcccgccggaggacatgccgttcatggccgacggaacc
cccgtcgacatcatcttgaacacccacggtgtcccgcgtcgtatgaacatcggccaggtc
ctggagatccacctcggttggttggcagcagccggctggtccgtcgatcctgaggatccg
aagaacgccgagctcatcaagaccctccccgaggagctttacgacgtccccgctgggtcg
ctcaccgcgacccccgtcttcgacggtgccaccaacgaagagctctccggcctgctggct
aactcccgcccgaaccgtgacggcgacgtcatggtcgacgagaccggtaagacgatgctt
ctcgacggtcgctccggcgaaccgttcccgtaccccgtttcggtgggctacatgtacctc
ctcaagctccaccacctggtggacgagaagatccacgcccgctctaccggcccgtactcc
atgatcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgag
atggaggtgtgggcaatgcaggcatatggtgctgcctacacgctgcaggagcttctgacc
atcaagtccgatgacgttgtcggccgtgtcaaggtctacgaagcgatcgttaagggtgag
aacatcccggacccgggtattcccgagtccttcaaggttctcctcaaggagctgcagtcc
ctgtgcctcaacgtggaggttctctccgccgacggcaccccgatggaactgtctggttct
gatgacgacgagctcgactccgctggatcctcgctgggcatcaacctgtcccacgacgag
cgctccgacgctgacgtcagctaa
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integrated database retrieval system
