Catenovulum adriaticum: OLW01_02230
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Entry
OLW01_02230 CDS
T08659
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
catt
Catenovulum adriaticum
Pathway
catt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
catt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLW01_02230 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
catt03021
]
OLW01_02230 (rpoB)
03400 DNA repair and recombination proteins [BR:
catt03400
]
OLW01_02230 (rpoB)
Enzymes [BR:
catt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLW01_02230 (rpoB)
Transcription machinery [BR:
catt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLW01_02230 (rpoB)
DNA repair and recombination proteins [BR:
catt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLW01_02230 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF1350
DUF2153
Motif
Other DBs
NCBI-ProteinID:
WAJ70652
UniProt:
A0ABY7AN12
LinkDB
All DBs
Position
499159..503187
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFRKFIDVDPDGQYGLEAAFHSVFPIV
SYSGSSELQYVSYHLGEPVFDVKECQVRGVTYSAPLRVKLRLVLYDKEAPAGTIKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYTTEQILDLFFDSVVFEIKESTCMMQ
LVPERLLGETAAFDINDSKGNLIVEKGRRITARHVRQLAKTNVAELEVPVEYLLGKILKK
SYVDESTGEIIAEANSEITLELLAELAKAGHKVIETLYVNDLDHGAYMSETLRVDSTSNR
IEALVEIYRMMRPGEPPTREAAEGLFENLFFNEDRYDLSSVGRMKFNRRVKREELVGSGI
LSNQDIIDVMKTLIDIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLENLTPQDLINAKPISAAVKEYFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASYARTNDFGFLETPYRKVVDGQV
TEQIEYLSAIEEGNYVIAQASAAVDDDNRLSDELVNCRHKNEFTLMNSDEVQYMDVAPQQ
IVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGVEKTVAIDSGVTVVAK
RGGVIDYVDASRIVVKVNDEETVPGEAGIDIYNLTKYTRSNQNTCINQKPTVEMGIPVVR
GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVEEDRLTTIHIQELSCI
ARDTKLGPEEITSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSISGTIIDVQVFTRDGVEKDKRAKEIEQMQVAEVKKD
LSTEFSILEDDIFARARTLLIKAGQSEAELDSMDRTKWLTQSLTDEDQQAELETIAEQYE
ETRAEFDKKLEIKRNKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISTI
LPVEDMPYDENGDAVDIVLNPLGVPSRMNVGQILETHLGAAAKGIGRQINIMLQEQREIH
ELRNYIQKAYDVGNCRQQVDIASFTDEEVLRLASHLKAGLPMGTPVFDGAKEPELKELLT
LAGLPTSGQIQLCDGRTGNPFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcttataccgaaaagaaacgcattcgtaaggattttggtaagcgtccgcag
gttctggatgtaccttatttgctttccatccagttagactctttccgaaaattcattgat
gtagaccctgatggtcaatatggtctggaagctgccttccactctgtattcccgatcgtt
agctactctggcagctctgagttgcagtatgtcagctaccacctaggcgaacccgtattt
gatgttaaagaatgtcaagtcagaggggtaacttattctgcaccccttcgtgtaaaactc
agattggttttatacgataaagaagctcctgcaggaacaataaaagatataaaagagcag
gaagtctatatgggtgaaatcccattaatgactgaaaacgggactttcgtaattaatggt
actgagcgtgttattgtatctcaattacatcgttcaccaggtgtattctttgaccacgat
aaaggtaaaacacactcatctggtaaagttttatataatgcacgcgttattccttaccgt
ggttcatggttagactttgagtttgaccctaaagataacttatttgtacgtattgatcga
cgtcgtaagttaccagcctcaattattttacgtgcattagaatatacaactgaacaaatt
ttagatcttttctttgactctgtcgtatttgaaattaaagaaagcacttgcatgatgcaa
ttggttcctgagcgtttgcttggtgaaactgctgcttttgatattaatgacagcaaaggt
aacttaattgttgagaaaggtcgccgtattaccgcgcgtcatgttcgccaattagcgaaa
accaatgtagctgagttagaagtaccagttgagtacttacttggcaaaatattgaaaaaa
tcttatgtagatgagtcaaccggtgaaattattgccgaggccaactctgaaattacatta
gaattgttagctgaactggcaaaagctggtcacaaagtgattgaaactttatacgtcaat
gatttagatcatggtgcgtatatgtctgaaactttacgagttgactcaacctctaatcgt
attgaagcgttagtagaaatctatcgtatgatgcgcccaggtgagccaccaacacgtgaa
gcggctgaaggtttgtttgagaacttattcttcaacgaagacagatatgatttatctagt
gtcggtcgaatgaaatttaaccgtcgtgttaagcgtgaagagttagttggttctggcatc
ttatccaatcaagatattatcgatgtaatgaaaacattgattgatattcgagatggtaaa
ggtgaagtagatgatattgaccacttaggtaatcgtcgtattcgttctgtcggtgaaatg
gctgaaaatcagttccgtgttggtttagttcgtgttgagcgtgctgttaaagagcgttta
agcttaggtgatttagaaaatttaacgcctcaagatttaattaatgctaagcctatttct
gctgcggttaaagagtactttggttctagtcagttatctcagtttatggaccaaaataat
ccattgtcagaggtgactcataaacgccgtatttctgcattaggtccaggtggtttaaca
cgtgaacgtgcaggcttcgaagtacgtgacgtacatccaactcactatggtcgtttatgt
ccaatcgaaaccccagaagggccaaacattggtctaattaactcattagcaagttatgcg
cgaactaatgattttggtttcttggaaacaccatatcgtaaagtagtagacggtcaggtt
acagaacaaattgaatacctctcagcgattgaagaaggtaattatgttatcgctcaggca
agtgctgctgttgacgatgacaatcgattatctgatgagttggtaaactgtcgtcataaa
aatgaatttacattgatgaattctgacgaagttcagtatatggatgttgctccacagcag
atcgtatctgttgctgcatcacttatcccattcttagaacacgatgatgcgaaccgtgca
ttaatgggttctaacatgcaacgtcaagctgtaccaacattaaaagctgataagccttta
gtcggtacgggtgttgaaaaaacagttgctatcgattctggggtaacggttgttgctaaa
cgtggcggtgttattgattatgttgatgcaagtcgcatcgtagttaaagtcaatgatgaa
gaaaccgtaccgggtgaagcgggcatcgatatttataacttaactaaatatacacgctct
aaccaaaatacttgtattaaccaaaaaccaacggttgaaatgggtattccagtggttcgt
ggtgacgtattggctgatggcccatcaactgacttaggtgagttggcattaggtcaaaac
atgcgtatcgccttcatgccctggaatggttataactttgaggattcaatcctagtttca
gagcgcgttgttgaagaagatcgtttaaccacaattcacattcaagaattaagctgtatc
gctcgtgatactaaattaggtcctgaagaaattacttcggatattcctaatgttggcgag
tcagctttatctaaattagatgaatctggtgtggtttatattggtgctgaagtgaaaggc
ggcgatatcttagtgggtaaagttacccctaaaggcgaaacccagttaacaccagaagag
aaactactgagagcaatttttggtgaaaaagcatcagacgtaaaagatagttctttacgt
gttcctaatagtatcagcggtactattattgatgttcaagtatttacgcgtgatggtgtt
gaaaaagataaacgcgctaaagaaattgaacagatgcaagttgctgaagtgaaaaaagat
ttatctactgaatttagcatcttagaagatgatatattcgctcgtgcacgcacattattg
atcaaagctggccaatctgaagctgagcttgattcaatggatcgcactaaatggttaaca
caaagcttaactgatgaagatcagcaagctgagttagaaaccattgcagagcaatatgaa
gaaactcgtgctgaatttgataaaaaattagaaatcaaacgcaataaaattacccaaggt
gatgacttagcgccgggcgtattaaaaatagttaaagtttatttagctgttaaacgtcaa
atccagcctggtgataaaatggcgggtcgtcatggtaacaaaggtgtaatttctaccatc
ttaccagttgaagatatgccatatgatgaaaatggtgatgcggtagatatcgtattaaat
ccattaggtgtaccttctcgaatgaacgtaggtcagatccttgaaactcacttaggtgct
gctgcgaaaggtattggtcgtcagattaatattatgttgcaagagcaaagagagattcac
gagttacgtaactacattcaaaaagcatacgatgtaggtaattgccgtcagcaagttgat
attgcaagtttcacagatgaagaagttcttcgtcttgcaagtcatttaaaagcgggttta
cctatgggtacacctgtatttgatggtgcaaaagaacctgaacttaaagaattgttgaca
cttgctggtttaccaacaagcggccaaattcagttatgcgatggtcgtactggtaaccca
tttgagcgtccggttactgttggttatatgtacatgcttaaattgaatcacttagttgat
gataaaatgcatgcgcgttcaacaggttcgtacagcttagttactcagcagccattaggt
ggtaaagctcagtttggtggtcaaagattcggtgagatggaagtttgggcacttgaagct
tacggtgcttcttatacactacaagaaatgttgacagttaagtcagatgacgttaacggt
cgtactaagatgtataagaacattgtggatggaaaccacaagatggaaccaggcatgcct
gagtctttcaacgtattgttgaaagaaatccgttctttaggtatcaacattgaattggaa
gaagagtaa
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