Carassius auratus (goldfish): 113038892
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Entry
113038892 CDS
T07313
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113038892
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113038892
09142 Cell motility
04820 Cytoskeleton in muscle cells
113038892
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
caua00535
]
113038892
Proteoglycans [BR:
caua00535
]
Extracellular matrix (ECM) proteoglycans
Others
113038892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113038892
NCBI-ProteinID:
XP_026052463
Ensembl:
ENSCARG00000012611
UniProt:
A0A6P6IYU5
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Position
21:20924625..20943349
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AA seq
679 aa
AA seq
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MAVFSALHLLVLFQLLTSSLAQQRPGPRGAPGVPGPPGPPGKDGIDGKPGPAGLPGKPGP
KGKAGKPGAAGSPGLHGLPGVDGLTGPDGPAGKDGPPGAAGDPGPPGPDGPPGRGRPGAL
GLAGANGLPGGPGPKGPPGPEGLPGLPGLPGPDGPPGLPGTLPEGNGDLLCPAICPPGPP
GPPGMPGFKGHTGHKGSKGELGKDGEKGDQGPPGPPGIPGTVGLQGSRGLRGLQGPVGAV
GDRGLPGFRGKPGVAGIIGKTGDAGERGPQGFRGPKGEIGKIGPKGLPGGVGPKGEPGIP
GRDGKDGTQGLDGEKGDAGRPGVAGEKGPNGLPGLPGKAGAKGAKGGVGGPGKMGEAGPS
GEPGIPGEIGVPGERGEAGPRGVTGGIGLAGNPGPQGVKGFQGVKGALGDPGLPGPTGIR
GGFGERGPVGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGAKGVVGPQ
GETGARGAPGKPGPMGFQGEQGFPGVPGKTGVPGKLASEQHIRELCGSMIDDQIAQLAAN
LRRPLAPGAVGRPGPPGPPGKQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEPGD
KGPVGKAIEGPAGDQGEPGLPGVHGIVKDGRDGAPGDPGEPGEAGRAGRPGHQGSPGICD
TSACQGAVVHGKSSNPKNH
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgttctcagcgcttcatctgctcgtcctcttccagctgctcacgtcgtctctg
gctcagcaaaggccgggtcctcggggtgcaccaggagtgccaggaccaccgggaccccca
gggaaagacggcatcgacggtaaacctggtcctgctggacttcctggaaagcctgggccg
aagggtaaagcaggtaaacctggggccgcagggagcccgggactgcatggcctccccggt
gtggatggtttgaccggtccggacggtccagctggcaaggacgggccgccaggagcagca
ggtgacccaggaccccccggaccagacggaccccctggcagaggcagaccaggagctctg
ggtcttgctggagctaatggactgccaggtggaccaggacctaagggtccgccggggccc
gagggtcttccaggactccctggtcttccaggcccagacggacctcctggactcccagga
acacttcctgaaggcaatggagatctgctgtgtccggccatctgtcctccgggtcctcct
ggaccgccgggaatgcctggattcaagggtcacacaggtcataaggggagcaagggggag
ctggggaaagacggagagaagggggatcaggggccaccgggaccgccgggaatcccgggg
acagtgggcttacagggctctcgagggctgagaggactgcaggggccggtgggagcagta
ggagacagaggactgccgggcttcagaggaaaacctggggtcgctggcatcattggaaaa
actggtgatgctggtgagagaggaccgcaaggtttcagaggacccaaaggagagataggg
aaaataggccccaagggactccctggaggcgtaggacctaaaggagaaccgggcatcccg
ggcagggacgggaaggatggcacccaagggctggacggtgaaaagggggatgctgggaga
cctggagtagctggtgagaagggacctaacggcctgcctggtttgccgggaaaagctggt
gcaaaaggtgccaaaggaggagttggcggtccaggaaagatgggagaagcggggccgtct
ggagagccaggtatacctggggagatcggcgtcccgggagagagaggagaggctggaccc
cggggggtgactggcggcattggtctagctggaaaccctggaccacaaggtgttaaagga
ttccagggtgtgaaaggggctttaggagaccccggtctgcctggtccgactggaatcaga
ggcggcttcggtgagcggggtccagttggagctggagggcctaaaggagacatgggagtt
gctggaagtgatggtttgccgggagagaacggggagccgggtccgtatggtcccgtcgga
cagaagggagagtccggtaagcgtggcgagctgggagccaaaggagttgtaggaccacag
ggagagaccggagccagaggtgcacctggaaaaccaggaccgatgggattccaaggagag
caaggttttccaggggttcctgggaagactggtgttcctggcaaactggctagtgagcag
cacatcagagagctgtgtggctccatgattgatgatcagatagctcagctcgctgctaac
ctgagaagacctctggctcctggtgctgtgggacggcctggaccaccggggcctccagga
aagcaaggagaagttgggtccatcggtcaccctggatcccttgggccgccaggttataga
ggactgccaggagatctcggtgatcctggtcctcgaggggacgtcggcgagccaggagac
aagggtccagtgggtaaagccatcgaagggcccgctggagaccagggtgaaccgggtctg
cccggcgtgcatggcatcgtcaaagacggccgtgacggagcacctggagatccaggagag
cctggagaagcaggacgagccggcagaccgggacaccagggatcacccggaatctgtgac
acatcagcgtgccaaggagccgtggttcacgggaagtcctccaaccccaagaaccattaa
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