KEGG   Carassius auratus (goldfish): 113038892
Entry
113038892         CDS       T07313                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
caua  Carassius auratus (goldfish)
Pathway
caua04510  Focal adhesion
caua04512  ECM-receptor interaction
caua04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:caua00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    113038892
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113038892
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113038892
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:caua00535]
    113038892
Proteoglycans [BR:caua00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   113038892
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 113038892
NCBI-ProteinID: XP_026052463
Ensembl: ENSCARG00000012611
UniProt: A0A6P6IYU5
LinkDB
Position
21:20924625..20943349
AA seq 679 aa
MAVFSALHLLVLFQLLTSSLAQQRPGPRGAPGVPGPPGPPGKDGIDGKPGPAGLPGKPGP
KGKAGKPGAAGSPGLHGLPGVDGLTGPDGPAGKDGPPGAAGDPGPPGPDGPPGRGRPGAL
GLAGANGLPGGPGPKGPPGPEGLPGLPGLPGPDGPPGLPGTLPEGNGDLLCPAICPPGPP
GPPGMPGFKGHTGHKGSKGELGKDGEKGDQGPPGPPGIPGTVGLQGSRGLRGLQGPVGAV
GDRGLPGFRGKPGVAGIIGKTGDAGERGPQGFRGPKGEIGKIGPKGLPGGVGPKGEPGIP
GRDGKDGTQGLDGEKGDAGRPGVAGEKGPNGLPGLPGKAGAKGAKGGVGGPGKMGEAGPS
GEPGIPGEIGVPGERGEAGPRGVTGGIGLAGNPGPQGVKGFQGVKGALGDPGLPGPTGIR
GGFGERGPVGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGAKGVVGPQ
GETGARGAPGKPGPMGFQGEQGFPGVPGKTGVPGKLASEQHIRELCGSMIDDQIAQLAAN
LRRPLAPGAVGRPGPPGPPGKQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEPGD
KGPVGKAIEGPAGDQGEPGLPGVHGIVKDGRDGAPGDPGEPGEAGRAGRPGHQGSPGICD
TSACQGAVVHGKSSNPKNH
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggccgtgttctcagcgcttcatctgctcgtcctcttccagctgctcacgtcgtctctg
gctcagcaaaggccgggtcctcggggtgcaccaggagtgccaggaccaccgggaccccca
gggaaagacggcatcgacggtaaacctggtcctgctggacttcctggaaagcctgggccg
aagggtaaagcaggtaaacctggggccgcagggagcccgggactgcatggcctccccggt
gtggatggtttgaccggtccggacggtccagctggcaaggacgggccgccaggagcagca
ggtgacccaggaccccccggaccagacggaccccctggcagaggcagaccaggagctctg
ggtcttgctggagctaatggactgccaggtggaccaggacctaagggtccgccggggccc
gagggtcttccaggactccctggtcttccaggcccagacggacctcctggactcccagga
acacttcctgaaggcaatggagatctgctgtgtccggccatctgtcctccgggtcctcct
ggaccgccgggaatgcctggattcaagggtcacacaggtcataaggggagcaagggggag
ctggggaaagacggagagaagggggatcaggggccaccgggaccgccgggaatcccgggg
acagtgggcttacagggctctcgagggctgagaggactgcaggggccggtgggagcagta
ggagacagaggactgccgggcttcagaggaaaacctggggtcgctggcatcattggaaaa
actggtgatgctggtgagagaggaccgcaaggtttcagaggacccaaaggagagataggg
aaaataggccccaagggactccctggaggcgtaggacctaaaggagaaccgggcatcccg
ggcagggacgggaaggatggcacccaagggctggacggtgaaaagggggatgctgggaga
cctggagtagctggtgagaagggacctaacggcctgcctggtttgccgggaaaagctggt
gcaaaaggtgccaaaggaggagttggcggtccaggaaagatgggagaagcggggccgtct
ggagagccaggtatacctggggagatcggcgtcccgggagagagaggagaggctggaccc
cggggggtgactggcggcattggtctagctggaaaccctggaccacaaggtgttaaagga
ttccagggtgtgaaaggggctttaggagaccccggtctgcctggtccgactggaatcaga
ggcggcttcggtgagcggggtccagttggagctggagggcctaaaggagacatgggagtt
gctggaagtgatggtttgccgggagagaacggggagccgggtccgtatggtcccgtcgga
cagaagggagagtccggtaagcgtggcgagctgggagccaaaggagttgtaggaccacag
ggagagaccggagccagaggtgcacctggaaaaccaggaccgatgggattccaaggagag
caaggttttccaggggttcctgggaagactggtgttcctggcaaactggctagtgagcag
cacatcagagagctgtgtggctccatgattgatgatcagatagctcagctcgctgctaac
ctgagaagacctctggctcctggtgctgtgggacggcctggaccaccggggcctccagga
aagcaaggagaagttgggtccatcggtcaccctggatcccttgggccgccaggttataga
ggactgccaggagatctcggtgatcctggtcctcgaggggacgtcggcgagccaggagac
aagggtccagtgggtaaagccatcgaagggcccgctggagaccagggtgaaccgggtctg
cccggcgtgcatggcatcgtcaaagacggccgtgacggagcacctggagatccaggagag
cctggagaagcaggacgagccggcagaccgggacaccagggatcacccggaatctgtgac
acatcagcgtgccaaggagccgtggttcacgggaagtcctccaaccccaagaaccattaa

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