Carassius auratus (goldfish): 113092379
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Entry
113092379 CDS
T07313
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113092379
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113092379
09142 Cell motility
04820 Cytoskeleton in muscle cells
113092379
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
caua00535
]
113092379
Proteoglycans [BR:
caua00535
]
Extracellular matrix (ECM) proteoglycans
Others
113092379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
113092379
NCBI-ProteinID:
XP_026113752
UniProt:
A0A6P6NYB8
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MIWREVCLYLLCNVIKRCFCTGLHAHIMPFSSTSHLQTDQTLCPQTKDENGQFPGFYIMN
QFNIAELARRGTVKKVPGTTSQHIAYKIGPEFNFRINTRSAFPMGLPEEFAFSATYRMSG
NTQSKSWNLWQLQDLNGNEQLAVRLNGEALSVEFSYRTQENRQMTALFPYQTLLFNSQWH
KILLLVKKGSVSLITDCKATDSQQLAPRRQVNLDGFTHIGKLRDNSAIAVPFELQSMLIH
CDLLNIPQRDTCGDLPARREISEAEFQRAGAGPPGPPGVPGVDGIDGERGDPGEDGSAGP
DGDLGKPGSAGLPGLPGADGLTGPIGELGPDGLPGQKGEPGNPGPRGGAGAGPDGPIGPP
GPGGLPGEQGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCSDACPHGAPGHPGL
PGMKGHKGVKGEVGEPGKQGHKGEEGDQGASGEVGAQGPVGSQGIRGATGMIGSKGETGP
RGVDGDPGPQGVAGATGDRGQRGLMGETGPKGEQGPPGSRGNTGLPGSKGDSGLPGVDGR
EGIPGMPGAKGAAGKPGSPGEVGLQGLPGLPGSPGPKGGGGEKGNAGQPGLIGTMGSVGK
QGERGEQGEFGPIGPIGQPGDRGEQGPPGPLGKPGARGPKGDLGLPGLPGPPGLPGIKGD
RGEAGEPGPKGEQGAQGDEGSPGDKGDVGDPGQLGAKGEVGNQGDPGNRGPEGARGQPGV
EGPPGSAGPRGIQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPE
SGAVGLPGRPGPPGPPGPQGDSGFPGHAGARGLPGLKGPLGLLGVKGPKGEMGDRGDRGP
TSRGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGTPGQPGVPGPPGSAGPPGYCDPSA
CNLSAGAVHQSLKDSSMKGPRRKLRSSLHRHSERLHYSSKKST
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagggaagtttgtctctaccttttgtgtaatgtgatcaaacgatgcttctgc
actggtcttcatgcacacatcatgccattttccagtacgagtcacctgcagacggaccaa
actctgtgtcctcaaactaaagatgagaatggccaatttccaggattttacataatgaat
cagttcaacattgcggagttggccaggagagggacggtgaagaaggtgcctggaacgaca
tctcagcatattgcatataagattggccccgagttcaacttcaggataaacaccagatct
gcatttcccatggggctgcctgaggaatttgcattttctgcaacctatcgaatgagtgga
aatacacagagtaagagctggaatttgtggcaactgcaagatctgaatggaaatgaacag
cttgcagtcagactcaacggggaggccctgtctgtggagttctcctacagaacccaagag
aacagacagatgacggctttattcccttaccaaaccctcctcttcaattctcagtggcac
aagattttattgcttgtcaaaaaaggttctgtgagcctgataacagactgtaaagcaaca
gattcacagcagctggcacccagaagacaagtaaacctagatggattcacgcatattgga
aaactgagggacaattcagcaatagctgtgccgtttgagctgcagtcgatgctgatccac
tgcgacttattaaacatcccgcagagagacacatgtggcgaccttcctgcgaggagggag
atatccgaagcagagtttcagagggctggagccggccctcctggtcctcccggtgtgcca
ggagtagacggtattgatggcgagagaggtgaccctggtgaagatggttcagctggtcct
gatggagatcttggaaaaccaggttctgctggacttcctggactacctggagcagatgga
ttgactggccccataggagaactaggccccgatggcctcccaggacaaaagggagaacct
ggcaatcctggacccagaggaggggcgggtgctggacctgatggaccgattggaccacca
ggaccaggaggacttccgggtgaacagggaaaagtgggaccccctggagccatgggagtg
agagggccacagggaccccgtggaccaacaggcccccgtggtgctgcagggatgctgggt
ggaacaatggaactgtgctctgacgcatgcccgcatggtgctcctggtcatcctggtttg
cctggaatgaagggtcataaaggggtgaaaggagaagttggagagcctggtaaacaagga
cacaagggagaggagggagatcagggggcatctggagaagtcggagctcaaggcccagtt
ggatcgcagggaattcgaggtgccactggtatgattggctccaaaggagaaacggggcct
cgaggtgttgatggggaccctggacctcagggtgttgcaggagccacgggtgatcgaggc
caaagaggattaatgggagaaactggccctaaaggcgaacagggacctccagggtcaaga
ggcaacactggtcttccagggtcaaaaggagacagtggtttgccaggtgtggatggacgt
gagggaattcctggcatgccaggtgccaagggtgctgccggaaaacctggaagccctggg
gaagttggccttcaaggactccctggtttaccaggaagcccaggaccaaaaggtggaggt
ggagagaagggtaatgcaggacaaccgggcctcatcggtactatgggatctgtaggtaaa
cagggtgaacgtggagaacaaggagaatttggacccattgggcctattggacaacctgga
gaccgaggagagcaggggccacctgggccgttgggaaaaccaggagccagaggtcctaaa
ggtgacttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggagat
aggggtgaagcaggagaacctggaccaaagggagaacagggcgctcaaggtgacgaggga
tcgccaggagacaagggagatgttggtgaccctggccaacttggagctaaaggcgaagtt
ggtaaccagggggatccgggtaatagaggaccagagggtgcccgtgggcagcccggcgtc
gaggggcctcctggtagtgctggaccacgtggcattcaggggaacagaggagctccagga
cctcgtggcacccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtg
tgcatgcgcgttatgcaggagcagttggcccagttggctgccagtctgaggagaccagag
tctggagcggtcggactgccaggcagacctggtccccctggtcctcccggaccccaaggt
gacagcggcttccctgggcatgctggtgcaagaggtctcccgggactcaaagggcccttg
ggtctgttgggtgtcaaggggccgaaaggtgagatgggagacagaggggacaggggacct
acaagtcggggacccaaaggcatgccaggacctcctggactaccaggtgaacctggaaaa
ccaggctacggtcaagatgggcgtgatggagaacggggtccacctggtaccccgggtcag
ccgggcgttcctggaccacctggttcagccggaccacccggttactgcgatccttcagcc
tgtaatctgagcgcaggtgccgtccaccagtccctcaaagactcgagcatgaagggacca
aggcggaaactaagaagctcactgcacagacattcagagagactccattacagctcaaag
aagagcacatga
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