Corylus avellana (European hazelnut): 132167794
Help
Entry
132167794 CDS
T09426
Name
(RefSeq) uncharacterized protein LOC132167794 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132167794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132167794
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132167794
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132167794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
132167794
NCBI-ProteinID:
XP_059434806
LinkDB
All DBs
Position
ca1:complement(40501264..40544452)
Genome browser
AA seq
2401 aa
AA seq
DB search
MLKFSSTASNQIRYLLQILDESNADSVLRELRQFVEYGVEGSIMLLQACIDHLNSYGTDS
KNMQLELVVASIFRYLLDQPNFSTVFFESLRNAEINEGTLENFSNALHLSVSEKIAIGLA
LSDSENLEARMSGKSFCMAQIEELCANPVLLNSSERIQNIVMFLQRSEALSKHLDSFMQM
LSFVQSNDVAPFVLTPLLSDELREANFLRNMDLFHDSGEDFDSILAEMEKEMSMGDIMKE
LGYGCTVNATQCKEILSLFLPLTEITVSKILGTIARTQAGLEDNQSMFSTLSLALGCSTL
FDLQSLDSWNIDVVIDTIKQLAPGTNWIRVIENMDHEGFYFPNQEAFSFFMTAYKRACQE
PFPLHAICGSVWKNTEGQLSFLKYAVSAPPEIFTFAHSARQLADIDAVHGHKLQLGHANH
AWLCLDLLDVLCQLAERGHATSVQLIVEYPIKHCPEVLLLGMAHVNTAYNLLQYEVTFSV
FPVIVKNAMNSGMLLHLWHVNPNMVLRGFIDALNSDPDSMTRILEICQELKIISAVLDMV
PSSYAIRLAALASRKELVDLEKWLSYNLNTYKDIFFEECLSFLKEIQFGGSQDFSTKTFH
HSGAVLNLYVETSSTFLKVLKAHTGLISSTQLAEEMEKLHVTTMDSNPRLQNGGATDSST
SDGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREQLIFECMIANLFEEYR
FFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTMALEQ
FVDRLIEWPQYCNHILQISHLRGTHSDIVAFIEQALARISSGHSDTDGGSHASVVNHHGS
TQATSGNLELNSSSIIQPGQQLSSPLQLQHRNESLEDRHKAAAVSSNDGKPLLSSVGQSS
AVHLGDASSIQKLQNAISAPPMLSSSSGFVRPSRAVTSTRFGSALNIETLVAAAEKRETP
IEAPASEIQDKISFIINNISVANIEAKAKEFNEIFKEQYYPWFAQYMVMKRASIEPNFHD
LYLKFLDKVTAKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLSVDMKDVTPTSLLKDRKREVEGNPDFSNKDVGASQPQLV
AEIKSGMVPPVNQVELPLEVASTPNSGGHTHLLSQYAASLHLPSGTLMEDEKLSALGLAD
QLPSAQGLLQATPSQSPFSLTQLPAPIPNIGTHVIINQKLSALGLHLHFQRVVPIAMDRA
IKEIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIFNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRNSLQGLNIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQ
QLALRRKHREGVGPTFFDGNMYTQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQ
SSQSSHAMPSGPASSGGTSLTGAYGSASGQLNPGYSSTSGSTGFEAVSRSQDESMESNSA
MHLSASSIHIGVADGVAQLSSENDSATGSFPPTSSASELHSLDSSDVAKESGASSQLLPS
PVATERLGNSISEPSLTTRDALDKYQIVAQKLEALLNNDGKEADIQGVIAEVPEIILRCI
SRDEAALAVAQKVFKGLYENGSNIIHVGTHLAILTAIRDVCKLVVKELTSWVIYSDEERK
FNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVIEESRVISELHN
LVDALAKVAAKPGSPESLQQLVEVVKNPAASVAALSGVNVGKEDKARQLKDKKPPGHSTA
SREDYNSVESVGPDPAGFGEQVSRLFAEWYRICELPGANDAACTHYILQLHQNGLLKGDD
MTDRFFRHLTELSVAHCLSSEVQSPQQVQNMSFLAVDIYGKLVFSILKGSSKLFLLSKIL
AVTVRFIQKDAEEKKTSFNPRPYFRLFINWLLDLSSLDPVIDGANIQILAAFANAFHALQ
PLKVPTFSFAWLELVSHRSFMPKMLTVNGQKGWPFVQRLLVDLFQFMEPFLRNAELGVPV
HFLYKGTLRVLLVLLHDFPEFLCDFHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTP
NLKIDLLAEIRQSPRILSDVEIALKAKQIKADLDEYLKTRQPASFVTELKQKLLLPPSDA
ASAGTRYNVPLINALVLYVGMQQLQSKTPHAQSPTNTVPLAMFFVGAALDIFQALIADLD
TEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPRYNFWNQTFIRCAPEIEKLFESVSRSCGGPKSVDESMVPGWVSDNT
H
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttttcgtcaacggcttcgaatcagattcggtacctgctccagatcctcgac
gaatccaacgccgactctgttcttcgtgagctccgtcagtttgttgaatatggagttgag
ggaagcattatgctgctccaagcatgcattgatcatctgaactcttacggcacagactca
aagaacatgcagctagaattagttgttgcatcaatttttagatacctgttggaccagcca
aatttcagcacggtgttttttgagtcgctaaggaacgcagagatcaatgaaggaactcta
gagaatttctctaatgcactgcacctgtctgtatctgaaaaaattgccattggtctcgct
ttgtcagattctgaaaaccttgaagccagaatgagtggaaaaagtttttgtatggctcag
attgaggaattgtgtgcgaatcctgttttactgaactcttctgagcgaattcagaatatt
gttatgttcctccagcggtctgaggccctttccaagcatttagattcctttatgcagatg
ttatctttcgtgcagtcgaatgatgttgccccatttgttttaacgccgcttctttcagat
gaattgcgtgaggccaattttctaaggaatatggatttgttccatgactctggagaagat
tttgattctattttagcagaaatggagaaggaaatgagcatgggagatattatgaaggaa
ctaggttatgggtgcacagttaatgcaacacagtgcaaagagattttatctcttttcttg
ccactgactgagattactgtgtctaaaatacttggcacaattgcccgcacccaagctggt
cttgaggacaatcagagcatgttttcaacgcttagcttggctcttggttgcagcactttg
tttgatctgcaatccttggactcctggaatattgatgttgtcatagatacaatcaagcaa
cttgctcctggaaccaattggatacgagttattgaaaatatggaccatgaggggttctac
tttcctaatcaggaggcattctctttttttatgactgcatataagcgcgcgtgccaggaa
ccattccctctccatgccatttgtggttctgtttggaagaatacagagggtcagctatct
tttcttaaatatgctgtttcagcaccaccagaaatatttacatttgcccattctgcaagg
cagctggctgatattgatgccgtgcatggccataagttacaacttggacatgctaatcat
gcatggttgtgtcttgaccttttggacgtgctatgtcaactagctgagaggggtcatgcc
acttctgttcagttgatcgttgaatatcctattaaacactgtcctgaagtcttacttctt
gggatggcacacgttaatactgcttataacctcctccagtatgaagtgacctttagtgtt
ttcccggttatagtaaaaaatgccatgaatagtggaatgcttcttcacctctggcatgtt
aatcccaatatggtgttgcgtggatttatagatgccctcaactctgatccagacagcatg
actagaatattggagatctgccaagagctaaagattatatcagcagtgttagatatggtt
ccttcttcttatgccatccgattggcagctcttgcgtcaagaaaagaacttgtagacctt
gagaagtggctcagttataatttaaatacatataaagatattttctttgaggagtgcctc
agtttcttgaaggagattcaatttggtggatcacaggatttttccaccaaaacattccat
cattccggtgctgtcttgaatctctatgtagagactagttctaccttcttgaaggtcctt
aaagctcatacaggcttgattagctctacgcagcttgctgaggagatggaaaagctgcat
gtaacaactatggattctaatccaaggttgcagaatggtggggctacagattcttcaacg
tctgatggatatgcagatgatattgaggctgaagcaaactcttacttccatcaaatgttt
tctggtcagttgaccattgaagcaatggttcaaatgcttgctcgattcaaggaatcctct
gtgaaaagggaacaattaatttttgagtgcatgattgcaaatctgtttgaggagtacaga
ttcttccccaagtatcccgagaggcagctcaaaattgctgcagttctgtttggctctgtt
atcaagcaccagcttgtaactcatctcacactcgggattgctctgcgtggtgttttagat
gctctacgcaaacctgcagattcaaaaatgtttgtgtttgggactatggctttggagcag
tttgtggatcgtctgattgagtggccacaatattgcaaccatatcttacagatatcccat
ctgcgcgggactcattcagatattgttgctttcatagaacaggctcttgcaaggatttca
tcaggccattcagacacggatggaggcagccatgcttctgttgttaatcaccatggttcc
actcaggctacctcaggaaatctggagctaaatagctctagcatcatacagcctgggcag
caactttcgtccccactgcagcttcaacatagaaatgaaagtcttgaagaccgtcataaa
gcagctgcagtatcatctaatgacgggaaaccactcttatcttctgtagggcaatcttca
gctgttcatttaggtgatgcttctagtattcagaagttacagaatgctataagtgctccg
ccaatgctttcttcttcatctggttttgttcgcccttctcgagcagttacttctaccaga
tttggctctgctctgaacattgaaacacttgttgctgcagccgagaaaagagagactccc
atagaggctccggcatcagagattcaagacaaaatttcttttatcataaataatatctca
gttgctaatattgaagctaaggcgaaagaattcaatgaaatttttaaggaacagtactat
ccctggtttgcacaatatatggttatgaaaagagcaagcattgagccgaattttcatgac
ttgtatttgaagtttttggacaaggttactgcaaaggctttgaataaagaaattgttcaa
gccacatatgagaactgcaaggttctcctaggatcagagcttataaagtcaagttccgaa
gagcgttcattgctaaaaaacttgggtagttggcttgggaagttaacaattggaaggaat
caagtcttacgggctcgtgaaattgatcctaaatctttgattatagaggcatatgagaag
ggattgatgattgcagtaataccatttacttccaaggttttggaaccatgccaaaacagt
ctagcatatcaacctcccaatccttggaccatgggcattcttgggttacttgctgagatt
tattcaatgccaaacttgaaaatgaacctcaagtttgatattgaggtcctattcaagaac
ctgagtgttgatatgaaggatgttacaccgacttctcttctcaaggatcgcaaaagggaa
gttgaagggaatcctgatttttctaacaaagatgttggagcatcccaaccacagttggtt
gctgaaattaaatccggaatggtaccaccagtgaaccaagttgagctaccgcttgaggtt
gctagtacacctaattctggaggccacacacatttgttatctcagtatgctgcttctctt
catcttccttctggtacattgatggaggatgaaaagctgtcagctttaggattggctgat
cagctcccttctgcgcaaggactcttgcaagccactccatcccagtcgccgttttctcta
actcagcttcctgcaccaatacctaacattggaactcatgttattatcaaccagaagctc
agtgctttgggcttacacctgcattttcagagagtggttccaattgcgatggacagagct
attaaagagatagtatctggtattgttcagcgcagtgtatctatagcaacccaaacaaca
aaggagcttgttttaaaggattatgccatggaattggatgaaacacgcatatttaatgca
gcacacttgatggttgcaagtctggctggaagtcttgctcatgtaacgtgcaaagaaccc
ttacgtgggtcaatatcaagtcagctgaggaattcacttcagggtctgaatattgcgagt
gaacttctagaacaagcagtacaacttgttacaaatgacaaccttgatctcggttgtgca
gtcattgaacaggctgccacggataaggcgatacaaaccattgatggggaaatagctcaa
caacttgctttgagaaggaagcatagagagggtgttggccccacattttttgatggaaac
atgtatacacaaggttctatgggtgttgtaccagaggccctccgtcctaaacctggtcac
ttgtccctttctcaacagcgagtttatgaggactttgttcggcttccctggcaaaatcaa
tctagccagagttcacatgctatgccttctggtcctgcttcatctggcggtacgagtctg
actggtgcatatggctccgcatctggacaattaaatcctggctactcatctacctcagga
agcacaggatttgaagcagtctctcggtcgcaagatgagtcaatggaatctaattcagct
atgcatcttagtgcttcctcaattcacattggagtggctgatggtgttgcccagcttagt
tctgagaatgattctgccactggttcgtttcctccaacttcttcagcctctgagttgcat
tcattggattcctctgatgttgcaaaggaatctggagcttcttcacagctattaccttca
ccagttgccactgagcgccttggaaatagcatatccgagccttcgctcaccactagggat
gcattggataaataccagattgttgcacagaagttggaagctttgctaaataatgatggt
aaagaagcggacatccagggagtcattgctgaagttcctgaaatcatactcagatgcatt
agtcgtgatgaagctgccttggctgttgcacaaaaggttttcaaaggtttatatgagaat
gggtcaaacattattcatgttggtactcatcttgcaattctgactgctattcgtgatgtt
tgcaagcttgttgttaaggagctcactagctgggttatttactcagatgaggagcggaag
ttcaacaaagatataactgttggtcttattcgcagtgaattgctaaaccttgcagagtac
aatgttcacatggcaaaacttattgatggaggcaggaataaggctgcaaccgagtttgca
atttcccttctgcaaactttggtcattgaagaatctagagttatatctgaacttcacaat
cttgttgatgctttagcaaaggttgctgcaaagcctggatctcctgagtcattacaacaa
ctagttgaggttgtgaagaatcctgctgctagtgtggctgctctatctggtgttaatgtt
ggaaaggaggataaagccagacaattgaaagacaaaaagcctcctgggcactctacagca
agtagggaagactataacagtgtggagtctgtaggaccagatcctgctggttttggcgag
caggtttctaggctgtttgcggaatggtaccggatatgtgaactgcctggtgcaaacgat
gcagcctgtacacattatatcttacagttgcatcagaatggactgctgaagggagatgat
atgacagatcgctttttccgccacctgactgagctttctgttgcacattgtctatcttct
gaggtacaatcacctcaacaagtgcagaatatgtccttccttgctgttgatatctatgga
aaactggtgttttctatcctgaaggggtctagtaaactctttcttttgtctaagattctg
gctgtgactgtgagattcatccagaaggatgcagaggagaagaaaacatcctttaatccg
cgaccatattttagattgttcattaactggctgctggacctgagttccctggatcctgtt
attgatggtgcaaacattcagattttggcagcgtttgcgaatgcatttcatgctttgcag
ccccttaaagttcctacattcagctttgcatggcttgagttggtgagtcacaggagtttc
atgccaaaaatgctcactgtaaatggtcagaagggatggccatttgtgcagcggttgctg
gtagacttgttccaattcatggagccatttttgaggaatgctgaactcggagtgccggtt
cattttctgtacaaaggcacgcttagggtgctgttagtgctgcttcatgatttccccgag
ttcctgtgtgattttcatttttccttctgtgatgtgattcctccgagctgcatacaaatg
cgaaacattatccttagtgcatttccccgtaatatgaggctgccagatccatctactccc
aacttaaagattgatttacttgcagaaatcaggcaatccccacgcattctctctgatgtt
gaaatagctcttaaagcaaagcagattaaggctgacttagatgagtatctcaagactagg
cagcctgcatcttttgtgactgaactgaagcagaaactactacttccaccaagtgatgct
gcctctgctggtacccgttacaatgtacccttgatcaacgcccttgtgctttatgttgga
atgcagcagctgcagtcgaaaactcctcatgcacagtcccctaccaacactgttccattg
gctatgttctttgttggtgccgccttggatatcttccaggctctaatagcggacttagac
actgaagggcgctacctctttcttaatgcggtcgctaaccaattgcgctatccaaacacc
catacacattacttctccttcatccttctttacttgtttgccgaatcaaatcaggaaata
atccaggagcaaattacaagagtgctgttggaacgcctgattgtcaaccgacctcatcca
tggggccttctcattactttcatcgagttaattaagaatcctagatacaacttttggaac
caaaccttcataaggtgtgcccccgagattgaaaaactatttgaatcagtctcaagatcc
tgcggagggccaaaatctgtggatgagagtatggttcctggttgggtatctgacaacacc
cactga
DBGET
integrated database retrieval system
