Cellulophaga baltica 18: M666_09215
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Entry
M666_09215 CDS
T03565
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbat
Cellulophaga baltica 18
Pathway
cbat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M666_09215 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbat03021
]
M666_09215 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbat03400
]
M666_09215 (rpoB)
Enzymes [BR:
cbat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M666_09215 (rpoB)
Transcription machinery [BR:
cbat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M666_09215 (rpoB)
DNA repair and recombination proteins [BR:
cbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M666_09215 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
AIZ41741
UniProt:
A0AAU8RDX2
LinkDB
All DBs
Position
2136977..2140786
Genome browser
AA seq
1269 aa
AA seq
DB search
MITNQTERINFASAKNIPSYPDFLDIQVKSFQDFFQLETKSDERGDEGLYNTFQENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINGVMYAYIDRKKKLPVTTLFRAIGFESDKDILEIFDLSEEVKVSVAGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTILEKEHIEQIVDADVKTVLLHKESAA
QSDYGIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFSK
VNSMGFLETPYRKVENGKVDIENFGYLSAEEEEGMKIAQANIPMDAEGNITAEKVIAREE
GDFPVVDPSEIQYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPQAPI
VGTGLERQVASDSRVLINAEGDGLIQYVDSQIITIKYDRTEEERLVSFEDDSKTYELVKF
RKTNQGTSINLKPIVRKGDKVKKGQVLCEGYATENGELALGRNLKVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR
SIKDKRKRSEDKEAISKLELEYEVKFQQLKDILVEKLFNLVNGKTSQGVLNDLGEEVLPK
GKKYTMKMLNAVDDFAHLVGGSWTTDKDNNNLVTDLLHNYKIKLNDLQGNLRRDKFTISV
GDELPAGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLADGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGLKLGKKYATPIFDGASLDQINEYTDEAGIPRFGHTYL
YDGGTGQRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVVGRAKTYEAIVKGETMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaatcagactgaaagaataaatttcgcatccgctaagaacattccgagctat
ccggatttcttggacattcaggttaagtcgtttcaagatttttttcaactagaaactaaa
tctgacgaaaggggagatgaaggactatataatacatttcaagagaattttcctattaca
gatactagaaatcagttcgtattagagtttcttgattattttattgatcctcctcgttat
tctatacaagaatgtatagagcgtggtcttacccatagcgttccgctaaaagcaagatta
aaattatattgtactgatccggaacatgaggatttcgaaactattgttcaggatgtatat
ttagggactatcccttacatgacaccaagtggtaccttcgttataaatggtgctgagcgt
gttgttgtatctcaattacatagatcgccaggtgtattctttggacaatcattccacgca
aatggaacaaaactatattctgcaagagttataccttttaaaggttcttggatagaattt
gcaactgatatcaatggcgttatgtacgcttacattgatagaaagaaaaaattacctgtt
actacactatttagagctattggttttgaaagtgataaggatatcttagagatttttgac
ctttctgaggaagtaaaagtttctgtagcaggacttaaaaaagtgctaggtcgtaaatta
gcggctagagtattaaatacttggcatgaagatttcgtagatgaagatactggcgaagta
gtgtctattgaaagaaatgaaattgtattagatcgtgatactatcttagaaaaagaacat
attgagcaaattgtagatgctgatgttaaaactgttcttttacacaaagaaagtgccgca
caatctgattatggtattatacataacacattacaaaaagatcctacgaattctgaaaaa
gaggcagtagaacacatataccgtcaattacgtaatgctgagccgccagatgaggaaaca
gcaagaggtattattgataaattattcttttctgatcaacgttacaatttaggtgaagtt
ggtcgttacagaatgaacaaaaaattaggtttagatattggaatggacaagcaagtcttg
actaaagaagatatcataactattattaagtatttaattgagttgattaactctaaagct
gaaattgatgatattgatcacttatctaaccgtcgtgttagaactgtaggagaacaatta
tcacaacaatttggtgttggtttagcgcgtatggctagaacaattcgtgagcgtatgaat
gtacgtgataacgaagtgtttactcctatcgatttaattaacgctaagaccttgtcttca
gtaattaattctttctttggtaccaaccagttgtctcaatttatggatcaaacgaatcca
ttagctgagattacgcacaagagaagattatctgctcttggaccaggtggtttatcaaga
gaaagagcaggtttcgaagtacgtgatgttcattatacacactatggtagactttgtcct
attgaaacaccagaaggaccaaacattggtttgatttcttctttatctgtattctctaaa
gttaactctatgggcttcttggagacgccatatagaaaagttgagaatggtaaagttgat
attgaaaactttgggtacttaagtgcagaggaagaagaaggaatgaagattgctcaggca
aacattccaatggatgctgaaggtaatattacagcagaaaaagttattgcaagagaagaa
ggtgatttcccagtggtagatccttcagaaattcaatatacagatgttgctcctaatcaa
attgcctctatttctgcatcccttattcctttcttggaacatgatgatgcgaacagagca
ttgatgggatcaaacatgatgcgtcaagcagttcctttattaaaacctcaagcgccaatt
gttggtaccggattagagcgtcaagtagcttctgattctagagtattaataaatgctgag
ggagacggacttattcaatacgtagattctcaaatcattactattaagtatgataggact
gaagaagagcgtttagtaagttttgaagatgattctaagacatatgagcttgttaagttt
agaaaaacaaaccaaggtactagtattaacttaaaacctatcgtaagaaaaggtgataaa
gttaaaaaaggtcaagtactttgtgaggggtatgcaactgaaaatggtgagttagcttta
ggtagaaacctaaaggtagcctttatgccttggaaagggtataactttgaggatgctatt
gtaatttctgaaaaagtagttcgtgaagatatctttacatctattcacgtagatgagtat
tctttagaagttagagatactaaattaggtgcagaagaattaactaatgacatacctaac
gtttctgaagaggctactaaagacttagatgaaaatggtatgattagaattggtgctgaa
gtaaaacctggcgatattctaattggtaaaattactccaaaaggggaatctgatcctact
ccagaagaaaaattacttcgggctatttttggtgataaagctggtgatgtaaaagatgca
tctttaaaagcttctccatcattaagaggtgttgtaattgataagaaattattctctcgt
tctataaaagataagagaaaacgttctgaagacaaagaagctatttctaaattagaatta
gaatacgaagttaaattccaacaattaaaagatattttagttgagaaattatttaaccta
gtaaatggtaaaacttctcaaggggtattaaatgaccttggtgaagaagtacttccaaaa
ggaaagaaatataccatgaaaatgcttaatgctgttgatgattttgctcacttagtgggt
ggaagttggacgacagataaagataataataacctagttacggatttattacataactat
aagattaaacttaatgaccttcaaggtaacctaagaagagataagtttacgatttctgta
ggtgatgaattaccagcaggtattatgaaattagctaaagtttatgttgctaaaaaacgt
aaattaaaagttggtgataaaatggcgggtcgtcacggaaacaagggtattgtttctaga
attgtacgtcatgaagatatgcctttcttagcggatggtacaccagtagatatcgtgttg
aacccattaggggtaccttctcgtatgaacattggtcagatttatgaaactgttcttgga
tgggcaggtcttaagttagggaagaaatatgcaacaccaatttttgatggagctagcctt
gatcaaatcaatgaatatacagatgaagctggtattccaagatttggacatacgtacctt
tatgatggtggtactggtcaacgttttgatcaaccagctacggtaggtgttatttacatg
ctgaaattaggtcacatggtagatgataagatgcatgcacgttctataggaccatactca
ttaattacacaacaaccattaggtggtaaagcacaatttggtggtcagcgttttggagag
atggaagtatgggcacttgaagcatatggtgcatctgcaactttacgagaaatattaaca
gtgaaatctgatgatgttgttggtagagctaagacgtatgaagctatcgtaaaaggagag
acaatgccagaacctggtttaccagaatctttcaacgtattaatgcatgaacttaaggga
ttaggtttagatattagactggaagagtag
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integrated database retrieval system
