Clostridium beijerinckii NCIMB 8052: Cbei_0144
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Entry
Cbei_0144 CDS
T00547
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbe
Clostridium beijerinckii NCIMB 8052
Pathway
cbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cbei_0144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbe03021
]
Cbei_0144
03400 DNA repair and recombination proteins [BR:
cbe03400
]
Cbei_0144
Enzymes [BR:
cbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cbei_0144
Transcription machinery [BR:
cbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cbei_0144
DNA repair and recombination proteins [BR:
cbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cbei_0144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF4369
Motif
Other DBs
NCBI-ProteinID:
ABR32334
UniProt:
A6LPQ4
LinkDB
All DBs
Position
179620..183330
Genome browser
AA seq
1236 aa
AA seq
DB search
MVHPVQVGKRTRMSFGKVNDVTEMPNLIEVQLDSYEWFLREGLHEVFDDINPITNFTGNL
VLEFVDYKLDMENIKYSVEECKERDATYAAPLKVSIRLQNNETGEIKEQEVFMGDFPLMT
EQGTFVINGAERVIVSQLVRSPGVYYNYSIDKSGKKLYSSTVIPNRGAWLEYETDSNDVI
YVRIDKTRKLSISILARAMGLGSDQELLDFFGEEERFRASIEKDNTKTKEEALLEIYKRL
RPGEPPTVDSAISLIDTLFFDAKRYDLSRVGRYKFNKKLALNLRIANQVAATDIVNPQTG
EIMVEKGQKISRLVAEEIQNAGVKSVDVLIEDKVIRVISNNFVDLKKQVSFDISDLGIKE
LVHYPTLKEILDNFSDEASIKEEIKKNISKLIPKHIIRDDIFATISYELGLTYGIGYVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEAITPQMLINIRPVAAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATFAKVNEYGFIETPYRIVDKENGRATDEIRYFTADEEDQCLIAEAKEP
MDENGHFINKKVRVRHLEDILVVPTTDVDLIDVSARQIVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLSPQAPIVGTGIEFKAAVDSGVLPKAKNAGVVTYVSGSEIRVKRDSDGGT
DVYKLLKFKRSNSGTCINQRPIVDTGEIVYKNQVIADGPSTDLGEIALGKNIRMGFITWE
GYNYEDAMLISEELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSDDALKDVDDR
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDIKVFTRENGDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASHLGWHIATPVFDGATQPEITECMIKA
GFREDAKTILYDGRTGEPFDNPVTVGIMYILKLHHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPES
FKVLIKELQALCLDIKVLNDEHEEVTLKEFVDEDMANLEVNIEGTEEIMVPEPDVLDDDS
YDQNNDEDIDEIDYDESVDIADLETELELDDFNDEH
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggaaaaagaacaagaatgagttttggtaaggttaatgat
gttactgaaatgccgaatttaattgaagtacaattagattcgtatgaatggtttttaaga
gaagggttgcatgaagtttttgatgatattaatcctatcacaaacttcacgggaaattta
gtacttgagttcgtagactataaacttgatatggaaaacatcaagtattctgtcgaagaa
tgtaaggaaagagacgcgacttatgctgcgccattaaaagtttcaatcagattgcagaat
aatgaaactggtgaaattaaagaacaagaagtatttatgggtgacttcccattaatgaca
gagcaaggtacctttgtaattaatggtgctgaaagagttatagttagtcaattagtaaga
tcaccgggtgtatattataactactctatagataagagtggtaaaaagttatattcatca
actgttattcctaatagaggagcatggttggaatacgaaacagattctaatgatgtaatt
tatgtaagaattgataaaactagaaaattatcaattagcatattggcaagagctatggga
ttaggcagtgatcaggagttgttagatttcttcggtgaagaagaaagatttagagcttca
atagaaaaagacaacactaaaactaaagaggaagcactacttgaaatatataaaagattg
agacctggtgaaccaccaacagtagatagtgctatatctttaattgatacattatttttc
gatgcaaaaagatatgatttatctagagtaggaagatacaaatttaataaaaaacttgca
ttaaacctaagaatagctaaccaagtagcggccactgatattgttaatccacaaaccgga
gaaataatggtggagaagggtcagaaaataagtagattagtagctgaagaaattcagaat
gcaggtgttaaatctgttgatgtattaatagaagataaagttattagagtaattagtaat
aactttgtagacttaaagaaacaagtttcctttgatatttcagacctaggaataaaagaa
ttggttcattatccaactttgaaagaaatattggataatttttctgatgaagcaagtatt
aaagaggaaattaagaagaatattagtaaacttattcctaaacacatcataagggatgat
atatttgcaactataagctatgaattaggattaacttatggaataggttatgttgatgat
atagatcatttaggcaatagaagattaagatctgtaggagaattattgcagaaccaattt
agaattggtctatctagaatggaaagagtagtaaaggaaagaatgactattcaagatcaa
gaagctataactcctcaaatgttaattaatataagaccagtagcagcagctattaaagaa
ttttttggtagctcgcagttatcacaattcatggatcaaacaaatccattatcagaactt
actcataaaagaaggttgtcagcattgggaccaggaggtctttcaagggaaagagctggt
ttcgaagtaagagacgttcaccattcgcattatggtagaatgtgtcctattgaaacacca
gaaggtccaaatatagggcttataaattctttggcgacttttgcaaaagttaatgagtat
ggatttatagaaacaccatatagaattgttgataaagaaaatggaagagctacagatgaa
ataaggtatttcactgcagatgaagaagatcaatgtttaatagctgaagcaaaagagcca
atggatgaaaatgggcactttataaataaaaaggtcagagtaagacatttagaggatata
ttagttgttccaacaactgatgttgatttaatagatgtatctgcaagacaaattgtatct
gttgcaactgcgatgataccattccttgagaatgatgatgcatcaagagctcttatgggt
tcaaacatgcaacgtcaagcagttccattactaagtcctcaagcaccaatagttggaaca
gggatcgaatttaaagctgctgttgactcaggggtattaccaaaggcaaagaatgctgga
gtagttacttatgtttcgggtagtgagattcgtgttaagagagactcagatggtggcaca
gatgtatataaattattaaagtttaagagaagtaactcaggaacttgtattaatcaaaga
ccgatagttgatacgggagaaatagtatacaagaatcaagttattgcagatggtccatct
acagatttaggtgaaattgcattaggtaagaacatcagaatgggattcataacttgggaa
ggttataattacgaagatgctatgctaatttcagaagaattggtcagagaagatgtcttt
acatctatgcatatagaagaatatgaatgtgaagctagagatacgaagctaggaccagag
gaaattacaagagacataccaaatgtaagcgatgatgcacttaaggatgtagatgacaga
ggaatcatacgaatcggtgcagaagtgagatcgggagacatattggttggaaaagtaact
ccaaaaggtgaaactgagcttacagcagaagaaagattgctaagagcaatatttggtgaa
aaggcaagagaagtaagagatacttcattaagagttcctcacggagaagctggaataatt
gttgatataaaagtatttacaagagaaaatggagacgaattgaatcctggagtaaatgaa
cttgtaagatgctatatagcacaaaaaagaaaaatttcagttggggataaaatggcagga
cgtcatggtaataagggggttatctctagaatattaccagaagaagatatgccattctta
ccggacggtagacctcttcaaatatgcttaaatccattaggagtaccttctcgtatgaat
ataggtcaggtacttgaagttcacttaggttgggcagctagtcatttaggatggcatata
gctacacctgtatttgatggtgcaacacaacctgaaatcacagaatgcatgataaaagca
ggatttagagaagatgctaaaactatattatatgatggtagaactggagaaccgtttgat
aatccagtaactgttggtataatgtatattttaaaacttcaccatttagtagatgataag
attcatgctagatctacaggaccatattcattggttactcaacaaccattaggaggtaaa
gctcaatttggtggtcaaagatttggtgaaatggaagtttgggcattagaagcatatgga
gcagcacatacacttcaggaaatattaactgttaaatcagatgatgttgtaggtagagtt
aaaacatatgaagctatagtaaaaggtgaaaatatacctgaaccaggggttccagaatca
ttcaaggttcttattaaggaactacaagcattatgcttagatattaaggtattaaatgat
gagcatgaagaagtaactttaaaggaatttgttgatgaagatatggcaaatctagaagtt
aatatagaaggcactgaagagattatggtgccagaaccagatgtattagatgatgatagt
tatgatcaaaataatgatgaagacatagatgaaattgattatgatgaaagtgtcgatata
gctgatcttgaaactgaattagaactagatgattttaatgatgaacactaa
DBGET
integrated database retrieval system
