KEGG   Clostridium botulinum Ba4: CLJ_B3194
Entry
CLJ_B3194         CDS       T00895                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
cbi  Clostridium botulinum Ba4
Pathway
cbi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbi00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CLJ_B3194 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbi03021]
    CLJ_B3194 (rpoD)
Transcription machinery [BR:cbi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CLJ_B3194 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r1_1 HTH_PafC Exonuc_VII_L DUF3826
Other DBs
NCBI-ProteinID: ACQ52010
UniProt: A0A3F2ZTI9
LinkDB
Position
complement(3201389..3202474)
AA seq 361 aa
MKEKKNNAKDKNEKMKLVRRLIDKGKKSGSLSYKEIMDELEEIDLSPEQIEKIYDVLESM
GVEVTGDMNDIDVKEEDIDLSVPEGIAIDDPVRMYLKEIGKVALLTSEEEIELAQRIEAG
DMVAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA
TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPV
DKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTL
TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaaagaaaagaagaataatgctaaagataaaaatgaaaaaatgaagttagttagacgt
ttaatagataaaggtaaaaaaagtggatcattaagttataaagaaattatggatgaatta
gaagaaatagatttaagtccagaacaaatcgaaaaaatatacgatgtattagagtctatg
ggtgtggaagttacaggtgatatgaatgatatagacgtaaaggaagaagatattgattta
tcagttccggaaggtattgctatagatgatcctgttagaatgtatttaaaagaaataggg
aaagtagcattattaacttcagaagaagaaatagaattagcacaaagaatagaagcagga
gatatggttgctaagaagaaattagcagaggctaatttaagacttgttgtaagtattgca
aagagatatgtaggaagaggaatgttatttttagatcttatacaagaaggtaacctagga
ttaataaaagctgtagaaaaatttgactatagaaaaggttacaaatttagtacttatgct
acttggtggataaggcaggccattacaagggctatagcagatcaagcaagaaccataaga
ataccagtccacatggtagaaactataaataaacttataagggtatcaaggcaactatta
caagaactaggtagggaaccacagccagaagaagtggctaagattatggaaatgcctgtg
gataaagtaagagaaataatgaaaatagctcaagaacctgtttctttagaaactccaatt
ggtgaagaggaagatagtcatttaggagactttattccagatgatgaagcaccggcgccg
gcagaagcagcagccttcacaatgttaaaagagcaacttattaatgttttagatacatta
acaccaagagaagaaaaggtattgagattaagatttggtttggatgatggaagagccaga
actttagaggaagttggaaaagaatttaatgtaacaagagaaagaataagacagatagaa
gcaaaagccctaagaaaattaagacacccaagtagaagtaaaaaattaaaagattattta
gattaa

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