Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_08720
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Entry
IPM89_08720 CDS
T10208
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPM89_08720 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbly03021
]
IPM89_08720 (rpoA)
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_08720 (rpoA)
Enzymes [BR:
cbly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPM89_08720 (rpoA)
Transcription machinery [BR:
cbly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPM89_08720 (rpoA)
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPM89_08720 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
DUF7219
Motif
Other DBs
NCBI-ProteinID:
QQS55852
LinkDB
All DBs
Position
complement(1965394..1966497)
Genome browser
AA seq
367 aa
AA seq
DB search
MVGAFDLLKPTRVEVEKLTPRLARVSVEPLERGFGYTLGNALRRILLSSIPGAAIVECEI
DQVLHEYSTIEGVQEDVIDVLLNLKGVAVTLQEGVSEASLTLTKKGPGPVTAGDIEKSHA
VEIINPEHVIAHLTKSGELGMRLKIEQGRGYWPAAQREGSDGESRPIGRLRLDASFSPIE
RISYRVESARVEQRTNLDKLILNLETNGTIDPEEAIRTAARILLDQLSVFVDLKGKRDEP
LPPPPVDIDPVLMQPVDDLELTVRSANCLKAENIYYIGDLVQRTEAELLKTPNLGKKSLT
EIKDVLAKYKLALGMKVDNWPPPNLSMEAEERAAARRAAGAAAEADRPLQEEVGSKAVDI
DADTDTE
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtgcttttgatttactaaaaccaacccgcgtcgaggtggaaaagctaacgccg
cggttggcgcgggtgagtgtggagccgctggagcgtgggtttggctataccctcggtaac
gcccttcggcggattttactctcatccataccgggcgccgcgattgtcgagtgtgaaatt
gatcaggtgttgcatgaatactccaccattgagggtgtgcaggaggatgtgatcgacgtt
ctcctcaacctaaaaggtgtggcggtcaccctgcaggaaggggtgagcgaggcgagctta
acgctgaccaagaaaggtccaggaccggtcacggctggcgatatcgagaagagccacgcc
gtcgagatcatcaatccggagcacgtcatcgcacacctgaccaagagcggcgagttgggc
atgaggctcaagatcgagcaaggtcgtggttactggccggcggctcagcgggaagggtcc
gatggcgaatctcggccgatcggccggttgcgcttggatgcttcgttcagcccaattgag
cggatcagttatcgggttgagagtgctcgtgtcgaacagcgcaccaacttggataagctg
attctgaatctggaaaccaacggtaccatcgatccggaagaggcgattcgcacggcagcc
cgaatcctgctggatcaactgtctgtgttcgtggatcttaagggtaaaagagacgaacca
ttgccgccgccgccggtggatatcgatccggtcctgatgcagccagtagatgatctggag
ctgactgtgcgttcggctaactgcctgaaggcggagaatatttattatatcggcgatctg
gtgcagagaaccgaggcggagcttctcaaaacccccaatctcggcaagaaatcgttgacc
gagatcaaggatgtgttagccaagtataagctggctttgggaatgaaggtcgataattgg
ccgccgccaaatctgagcatggaagcggaagagcgtgcggcggcgcgacgcgctgctgga
gcggcggccgaagcggatagacctctgcaggaggaagtgggttcgaaagctgtggatatc
gatgccgataccgataccgaataa
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integrated database retrieval system
