Clostridium botulinum F 230613: CBF_3656
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Entry
CBF_3656 CDS
T01865
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBF_3656 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbm03021
]
CBF_3656 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_3656 (rpoC)
Enzymes [BR:
cbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBF_3656 (rpoC)
Transcription machinery [BR:
cbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBF_3656 (rpoC)
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBF_3656 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADG01198
LinkDB
All DBs
Position
complement(3814182..3817718)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYRESIDKYGDDSFVAAMGAEAVKTLL
DEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQNGLAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVSVPTQDMVLGSYYLTMDKDGVKGEGKVFSCPEEVLMAYQCKAVDIHAKIKV
RLKKVIDGETIEGIIETTPGKIIFNESIPQDLGYIDRTIPENKLKLEVDFLVSKKTLGGI
ITKCYMKHGATKTSIMLDKIKAKGYHYSTIGAITISTSDMVVPESKRELLENTEKQVEKI
QKMYRRGFISEEERYEKVIDLWTKTTEDVANALMESLDSFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKILELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTEEGYEVSEIKEGNEVIEPLVERLSGRYPSEDIIHPTTGEVIVK
RNTYMDEDIAQKVSDAGIKKVKIRSVFTCKSKHGVCARCYGMNMGTSQKIHIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTIIVVTDDGEEVSYDIPFGSRIKVKNGDIISAGDEITEGSINPHDILRIKGVDGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEDSGDTELLPGTMIDVFDFEEANR
EILEKGGEPAVGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSIQINTDDENIEEDSMDSMEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagttaaataattttgatgctttacaaataggtttagcttcaccagaaaagata
agagagtggtcaagaggtgaagttaaaaagccagagactataaattatagaacactaaaa
ccagaaagagatggtttgttctgtgaaagaatttttggtcctatgaaggattgggaatgc
cattgtggtaaatataaaaggataagatataagggcatagtttgtgatagatgcggagta
gaggttactaaagctaaagtaagacgtgagagaatggggcatatagaacttgctgcccct
gtatctcatatatggtatttcaaagggattccatcaagaatgggattaatattagatatg
tctccaagagctttagaaaaagttttatactttgcttcgtatgtagtattagatccaaaa
gaaacacctcttttaaagaaacaattattaaatgaaaaagagtatagggaatctatagac
aaatatggagatgacagctttgtcgcagcaatgggtgcagaagctgtaaagactctttta
gacgaaatagatttagaacaatcatctattgaacttaaagaagagttaaaaacaagtaca
gggcaaaagaaaataagaataataagaagattagaggtagtagaatcttttagaaaatca
ggaaatagacctgattggatggttatagatgttataccagtaattccacctgatttaagg
ccaatggttcaactagatggaggaagatttgctacatctgatttaaatgatttgtataga
agagttataaatagaaataacagactaaaaaaattgttagacttaggggctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctttaatagataatggt
agaagagggagaccagtaacaggaccaggaaatagacctcttaaatcattatcagatatg
ttaaagggtaaacaaggtagatttagacaaaacttactaggaaagcgtgttgactattcg
gggcgttcagttatagttgtaggaccagaattaaaaatgtaccaatgtggtttaccaaaa
gaaatggctcttgaattatttaaaccatttgttatgaaaaaacttgttcaaaatgggtta
gcacataatataaaaagtgctaagagaatggtagaaagagttcaaccccaagtttgggat
gtattagaagaagttatttctgatcacccagtattattaaaccgtgcccctactcttcac
agattaggaattcaagccttccaacctgtgctagtagagggaagagcaattaaacttcat
ccacttgtatgtacagcatataatgcagactttgatggagaccaaatggctgttcacgta
cctttatcagttgaagctcaagcagaggcaagattcctaatgctagcagcacataatata
ttaaaaccatctgatggtaaaccagtgtctgtacctacacaagatatggttttaggttct
tattacttaacaatggataaagatggagtaaagggtgaaggaaaagtattttcttgtcct
gaagaagtacttatggcatatcaatgcaaagctgttgatatacatgctaaaataaaagta
agattaaagaaagttatagacggagaaactattgaaggaataatagaaacaacaccagga
aaaattatatttaatgaatctataccacaggatttaggatatattgatagaacaatacct
gaaaacaagttaaaattagaagtagattttcttgtatctaaaaagacattaggtgggata
attaccaaatgttatatgaaacatggtgcaacaaaaacttctataatgttagataaaatc
aaagcaaaaggatatcattattctactataggagctattactatttctacttcagatatg
gtagtgccagagtctaagagagaactacttgaaaatacagaaaaacaagtagaaaaaata
caaaaaatgtatcgtagagggtttatatctgaagaagaaagatatgaaaaagttattgac
ctttggactaaaacaacagaggatgtagctaatgctcttatggaaagtttggatagtttt
aatcctatatatatgatggctgattcaggagccagaggttctaaaagtcagataaagcaa
ttagcaggtatgagagggcttatggctaacccatcaggtaaaattctagagttaccaatc
aaagcttcttttagggaaggtttagatgtgttagagtattttatatcaacacacggtgct
agaaaaggtaacgcagatacagctttaaaaacagctgactcaggatatttaactagaaga
cttgttgacgtttcacaggatgttatagtaaggcaagaagattgtggaacagaagaagga
tatgaagtatctgaaataaaagaaggaaatgaagtgatagagcctttagttgaaagatta
tcaggcagatatccttcagaagatattattcatcctacaacaggagaagtaatagtaaaa
agaaacacatatatggatgaagatatagctcagaaggtatcagatgcaggaattaaaaaa
gttaaaataagatctgtattcacttgtaaatcaaaacatggtgtttgtgctagatgttat
ggtatgaatatgggtacttcacaaaaaattcatataggtgaagcagttggtattgttgct
gctcaaagtataggagaaccaggaactcagcttacaatgagaacattccatacaggtggt
gttgctggagctgatataactcaaggtcttccaagggttgaagagcttttcgaagctaga
aaacctaaaggattggctattgtaagtgaagtatcaggaacagtaaaaatggaagaaact
aagaaaaaaagaacaataatagttgtaactgatgacggtgaagaagtttcctatgatatt
ccatttggttctagaataaaagttaaaaatggagatattatatcagcaggagatgaaata
acagaaggttcaataaatccacatgatattttaagaataaaaggtgttgacggagttaaa
aattatcttttatcagaagttcaaaaagtttatagactacaaggtgttgatataaacgat
aaacatcttgaagtagttataagacaaatgacaagaaaaataaaaattgaagattcagga
gatactgaattattgcctggaacaatgatagatgtttttgactttgaagaagccaataga
gaaatattagaaaaaggtggagaaccagcagtaggtagaatagctttattaggaataaca
aaagctgcactagctacagattcattcctttcagctgcatcattccaagaaactacaaga
gttcttacagatgctgctatcaaagggaaaattgatccactattaggtttaaaagaaaat
gtaattattggtaaattaatacctgcaggtacaggtatgacaagatatagatctattcaa
ataaatactgatgatgaaaatattgaagaagattccatggattcgatggaagtatag
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