Clostridium botulinum BKT015925: CbC4_0220
Help
Entry
CbC4_0220 CDS
T01475
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbn
Clostridium botulinum BKT015925
Pathway
cbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CbC4_0220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbn03021
]
CbC4_0220 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbn03400
]
CbC4_0220 (rpoB)
Enzymes [BR:
cbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CbC4_0220 (rpoB)
Transcription machinery [BR:
cbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CbC4_0220 (rpoB)
DNA repair and recombination proteins [BR:
cbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CbC4_0220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEB74900
LinkDB
All DBs
Position
227745..231440
Genome browser
AA seq
1231 aa
AA seq
DB search
MSFSKVKEMCPMPNLIEVQLNSYDWFWKEGLNEVFDDINPIQDYTGNLILEFIDYNLDKD
AIKYSVEECKERDATYAAPLKVKVRLLNKETGEVKEQEVFMGDFPLMTQQGTFVINGAER
VIVSQLVRSPGAYYGYDVDKTGKKLFSATVIPNRGAWLEYETDSNDIIYVRIDKTRKLPI
SILIRALGLGSDAEIIEWFGEEERLKSTIEKDNTKTREEALLEIYKRLRPGEPPTVDSAV
SLINSLFFDAKRYDLSRVGRYKFNKKLAIYIRLLNQVAAEDVVNPFTGEIIVQKGETIER
DKALEIQNCAINAVNIQVEDKVIKVIGNNFVDIHNFVDFDISDLKIKEHVHYPTLKKILD
NYTDEESIKEEIRKNIHELIPKHIVVDDIYATVSYELGLPYSIGTIDDIDHLGNRRLRSV
GELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAAAIKEFFGSSQLSQFMD
QTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLA
CYAKVNEYGFIETPYRLVDKKDARVKEELVYLTADEEDHYLVAQAKEPLDKEGHFLEDKI
TVRTLEDVIVVSKHQVDLMDVSPSQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLK
PAAPIVGTGIEFKAAVDSGVLPKAEHDGVVEYVSSTEVRIRRDADGGLDRCKLLKYKRSN
QGTCINQRPIVSKGEKLKAGDVLADGPSTDFGEIALGQNIRMGFITWEGYNYEDAMLVSE
QLVRDDIFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNIDERGIVRIGAEVRSG
DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGD
ELPPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNP
LGVPSRMNIGQVLEVHLGWAAGEMGWHIATPVFNGAFEDEIVDLLKEAGYNADGKTVLYD
GRTGEPFDNRVTVGYMYILKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAHTLQEVLTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALC
LDVKVLSGDNEEITIKESVEEEMEELGVNIEGNEDEIIPTTQHQQSKDDSEEAVEDMNDI
DEFDEMKLEYNDLPLDELENGLELEDFNDEH
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttcaaaagtaaaagaaatgtgtcctatgccgaaccttattgaggtacaatta
aattcctacgattggttttggaaagaaggactaaatgaagtatttgatgatatcaatcca
atacaggattacacaggcaatcttatcttagaatttatagattataacttagataaagat
gctattaaatattctgtagaagagtgtaaagagagagatgcaacttatgctgcaccttta
aaagttaaggtaagattacttaacaaagaaactggagaagtaaaagaacaagaagtgttc
atgggagattttccgttaatgacacaacagggtacgtttgtgattaacggagcggaaaga
gttatagtaagtcagcttgtaagatcaccaggagcttactatggttacgatgtagataag
acaggtaaaaaactattttcagctacagttatacctaatagaggagcttggctagaatat
gaaacagattctaacgatattatatacgtaagaatcgataaaacaagaaaacttccaatt
agtattttaataagagcattaggccttggaagtgacgctgaaattatagaatggtttggt
gaagaagaaagactaaaatcaactatagaaaaagataatacaaagactagagaagaagca
ttacttgagatatataaaagattaagaccaggtgaaccacctacagtagatagtgcagtg
tctcttataaattctttattttttgatgctaagagatatgatttatctagagttggtaga
tataaattcaacaaaaagctagctatttatataagattacttaatcaagtagcagcggaa
gatgttgttaacccattcactggtgagattatagtacaaaaaggtgagactattgaaaga
gataaagcattagaaatacaaaattgtgctataaatgctgtaaatattcaagttgaagat
aaagttataaaagtaataggaaataattttgttgacatacataattttgtggattttgac
atttcagatttgaaaataaaagagcatgttcattatcctacattaaagaaaattcttgat
aattatacagatgaagaaagtataaaggaagaaataagaaagaacatacatgaattgatt
ccaaaacatatagttgtagatgacatttatgcgactgttagttatgaattaggattacct
tattcaataggtactatagatgatatagatcatttaggaaatagaagattaagatctgtt
ggtgaattattacaaaaccaatttagaattggattatcaagaatggaaagagtagtcaaa
gaaagaatgactattcaagaccaagaagttataacacctcaagcattaattaatattaga
ccggtagcagctgcgataaaggaattctttggaagttctcagctttcacaattcatggat
caaacaaatcctttatcagaattgactcacaagagaagattatcagctttaggaccagga
ggactttcaagagaaagagctggatttgaagttagagacgttcaccattctcattatggt
agaatgtgtccaatagaaactcctgaaggacctaacataggtcttattaactcacttgca
tgttatgctaaggttaatgagtatgggtttatagaaactccatatagacttgtagataag
aaagatgcaagagtaaaagaggaacttgtatacttaacagcagatgaagaagatcattat
ttagtagctcaagcaaaagagccattagataaagaaggtcatttcctagaagacaagata
acagttagaacattagaagatgttatagttgtatcaaaacatcaagttgatttaatggat
gtttcacctagtcaaatagtatctgtagctacagctatgatacctttccttgaaaatgat
gacgccagccgtgcacttatgggatccaacatgcaacgtcaggcagttccattactaaaa
ccagcagctccaattgttggaacaggaatagagtttaaagcagctgtagattcaggggta
ttacctaaggctgaacatgatggtgtagttgaatatgtaagttcaactgaagtaagaatc
agaagagatgctgatggtgggcttgatagatgtaaacttcttaaatacaagagatctaac
caaggaacttgtataaatcaaagacctatagtaagcaagggtgagaaattaaaagctggg
gatgttttagctgatggaccatctacagattttggtgaaattgcattaggtcaaaatata
cgtatgggattcataacttgggaaggatataactacgaggatgctatgttagtttcagag
caacttgtacgtgatgatatatttacatctattcacattgaagaatatgaatcagaagct
agggatacaaaactaggaccagaagaaataacaagagatatacctaatgtaggagaagat
gctcttaaaaatatagatgaacgtggaatcgtaagaataggtgcagaagttagatcagga
gatatattagtaggtaaagttactcctaagggagaaacagaacttacagctgaagaaaga
cttctaagagctatattcggagagaaagcaagagaagttagagatacttcattaagagtt
cctcatggagaagcaggaatcattgttgatgtaaaagtgtttacaagagaaaatggtgat
gaattacctccaggagttaatgaacttgtaagatgctatatagcacaaaaaagaaaaata
tcagttggagataagatggcaggaagacatggtaataagggtgttatttctagaatatta
ccagaagaagatatgccattcttaccagacggaagaccacttcaaatatgcttaaatcct
ctaggcgtaccttctcgtatgaatatcggtcaggtacttgaagttcacttaggatgggca
gcaggagaaatgggatggcacatagcaacaccagtatttaatggtgcattcgaagatgaa
attgtagatttattaaaagaagctggatataatgctgatggtaaaactgttttatatgac
ggaagaacaggagaaccttttgataatagagtaactgtaggatatatgtatatcttaaaa
cttcatcacttggttgatgataagatacatgcaagatctacaggaccatattcattggtt
actcaacaaccattgggtggtaaagcacaattcggtggtcaaagattcggagaaatggaa
gtttgggcacttgaagcatatggtgcggcacacacacttcaagaagttctaacagttaaa
tcagatgatgttgttggtagagttaagacttatgaagctattgttaagggagaaaatatt
ccagaaccaggagttccagaatcatttaaagtacttataaaagaacttcaagctttatgc
ttagatgtaaaagtattaagtggtgataatgaagaaatcacaataaaagaatctgtggaa
gaggaaatggaagaattaggtgttaacatagaaggaaatgaagatgaaatcattccaact
acacaacaccaacaatcaaaagacgatagtgaagaagctgtagaagatatgaatgacatt
gatgaatttgatgaaatgaagttagaatataatgatctaccattagatgaacttgaaaat
gggttagagttagaagattttaatgatgaacattaa
DBGET
integrated database retrieval system
