KEGG   Calonectris borealis (Cory's shearwater): 142082800
Entry
142082800         CDS       T11211                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
cbor  Calonectris borealis (Cory's shearwater)
Pathway
cbor03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cbor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    142082800 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbor03400]
    142082800 (TDP1)
DNA repair and recombination proteins [BR:cbor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     142082800 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 142082800
NCBI-ProteinID: XP_075007403
LinkDB
Position
5:complement(19727594..19783053)
AA seq 607 aa
MLQEGAHGKWTVSSSDESTEENSDSEKPSTSSLLDAARGRTSGPQYPCSEARKAAHKRKA
SPLKLSDKKFSTEIHPAEKQRTSQEGLGWCLSSSDEEPEDQEKHAHKETLKEEKCDAPKE
HPLNLHKDDELLETQKAEDYSEMPSEAQDTWDLLNGGNPFRFFLTKVRGIKQSYNSGALH
IKDILSPLFGTLISSAQFNYCIDVEWLVRQYPQEFRKKPLLIIHGEKRESKAELLAQARP
YENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIADDWHQKTQGIWLSPLYPR
LPQGTTGSAGESETNFKSDLISYLMAYNSPALKEWIDLIQEHDLSETRVYLLGSTPGRYQ
GSDKEKWGHLRLRKLLKEHSSSIPAQESWPVVGQFSSIGSMGADGSKWLCSEFQESLVAA
SSSVTNFLKCDVPVHLVYPTVNNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAE
ISGRSHAMPHIKTYMRPSPDFQKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF
LPSAFGLDKGYFHVRRKMLSESNDSATYFPVPYDLPPEQYGSKDQPWIWNIPYTNAPDTH
GNMWVPS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgcttcaggaaggtgcacacggaaaatggacagtatctagcagtgatgaaagtactgag
gaaaattctgacagtgaaaaaccatctacatcttcactattggatgctgcacgtggcaga
acaagtgggccacaatatccctgctctgaagctaggaaagctgctcacaagagaaaagct
tctcccctgaagctcagtgataaaaaattttctacagaaatacatccagcagaaaaacag
agaactagccaggaaggcttaggctggtgtctttctagtagcgatgaagagcctgaagat
caggaaaagcatgcccacaaagaaacgctgaaagaagaaaaatgtgatgcacccaaagaa
catccgctgaatcttcacaaagatgatgaactcttagagactcagaaagcagaggactat
agtgaaatgcccagtgaagcccaagatacctgggatttgttgaatggaggaaaccctttc
aggttttttctcactaaagtcagaggaattaaacagagctataattctggagccctgcac
ataaaagatattttgtctcctctttttgggactctgatatcgtctgcccagtttaactac
tgtatagatgtggaatggcttgtaagacagtatccgcaggaattcaggaagaagccattg
ctgatcattcatggcgaaaagagagaatccaaagctgaactgcttgcacaagcacgccct
tatgagaacattagcttttgtcaggctaaactggatattgcatttggaactcaccatacg
aaaatgatgttgttgttatatgaagaaggtcttcgagttgtgatacatacatccaatctt
attgctgacgattggcaccagaaaactcagggaatatggctgagtcctttatatccaagg
ctacctcaaggaacaactggttctgctggtgaatctgaaactaattttaaatctgaccta
ataagttacttgatggcttacaattcacctgcgctcaaggaatggatagatctgattcaa
gaacatgatttatcagagacaagagtgtatctgcttggttctacccctggacgatatcaa
ggtagtgataaagaaaagtggggtcatcttaggctcagaaagcttttgaaagagcattct
tcgtcaataccagcacaggaatcctggcctgttgttggacagttctcaagcattggttca
atgggagctgatggatccaagtggctgtgctcggagttccaggagagcctggtggctgca
agcagcagtgtgacaaatttccttaaatgtgatgttccagttcatttggtttatcctact
gtgaacaatgtgaggcaaagtctggaaggctatcctgctggtggctcccttccgtacagt
atacagacagcacagaaacagctgtggttgcattcctattttcacaaatggtcagcagaa
atctcgggtcgaagtcatgctatgcctcacattaagacatacatgagaccctctcctgac
ttccagaagattgcatggttcttagttacaagtgccaatctatctaaagcagcttgggga
gctctggagaaaaatggaacccaactgatgatccgttcttacgaacttggagtccttttc
ttgccttcagcatttggattggacaaaggttactttcatgtgagaaggaaaatgctttca
gaaagtaatgattcagcgacgtattttcctgtaccttatgacctgccaccagaacagtat
ggaagcaaagatcaaccatggatttggaatattccttacactaacgcccctgatacacat
ggaaatatgtgggttccatcatga

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