Calonectris borealis (Cory's shearwater): 142088896
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Entry
142088896 CDS
T11211
Symbol
PDGFRB
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04010
MAPK signaling pathway
cbor04020
Calcium signaling pathway
cbor04510
Focal adhesion
cbor04518
Integrin signaling
cbor04540
Gap junction
cbor04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
142088896 (PDGFRB)
04020 Calcium signaling pathway
142088896 (PDGFRB)
09133 Signaling molecules and interaction
04518 Integrin signaling
142088896 (PDGFRB)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142088896 (PDGFRB)
04540 Gap junction
142088896 (PDGFRB)
09142 Cell motility
04810 Regulation of actin cytoskeleton
142088896 (PDGFRB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cbor01001
]
142088896 (PDGFRB)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cbor04090
]
142088896 (PDGFRB)
Enzymes [BR:
cbor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
142088896 (PDGFRB)
Protein kinases [BR:
cbor01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
142088896 (PDGFRB)
CD molecules [BR:
cbor04090
]
Proteins
142088896 (PDGFRB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
C2-set_2
VEGFR1-3_N_Ig-like
Motif
Other DBs
NCBI-GeneID:
142088896
NCBI-ProteinID:
XP_075020866
LinkDB
All DBs
Position
15:complement(23284007..23306398)
Genome browser
AA seq
1171 aa
AA seq
DB search
MVLEGGRGKVCTHAGREERMVRGITQMESWDFTSVAARLVVSEGWCSEVTFIYSLNFTSV
LPSYPPPARFGHRATEPAMLRPSLKTSLWLLILTGLLEVTSGGSGLHIEPRDTELVLSLH
STFSLLCYGDGTLVWEREGQPLAASLEHRDGVFVSNLTLRNVTGRHTGEYVCTYSPDQAP
EPAERKALYIYVPDPSLVFLPTITSEELFIFITGYTEAVIPCRVTNPQMQVTLYEKKVEN
PIPAAYDPQQGFKGFFEDKTYFCRTIVDDQEVDSDTFYVYRIQVSSVNVSISAVQTIVRQ
GENVTLMCTVSGNELVNFNWDYPRKQAGKAVELVTDFLPGSTHEIRSILIIQNAELEDSG
TYVCNVSEGYHEKTDRKDITVHVIEHGFVRFHTHLPSTVYAEVHKSHTIQVEVEAYPQPS
IVWLKNNKTLTMESSSEFTITSRNLSETRYQTALVLVRVKQEEGGFYTIRASNEDDEQEL
SFHLQINVPAKVVDLKENSSASSGEQTVTCSAEGMPQPEISWSTCSDIKWCSAKGQPTRL
LGNESAEIGLQTNATYHAELQVYRVNSTLQLHRVDEPLLLRCTVQNFLGTNSQDITLVPH
ALPFKVVIISVILALLVLTVISLIILIVLWQKKPRYEIRWKVIESVSSDGHEYIYVDPMQ
LPYDSSWEVPRDKLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQ
ALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQSYGE
KARREVEVYGNTAKEDHVQSHLSLSVESDGGYMDMSKDDSLDYVPMSDMKGEVKYADIES
SNYGTPYELDSYSPSAPERTDRVTLINESPLLSYMDLVGFSFQVANGMEFLASKNCVHRD
LAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDV
WSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMSKPTHASDEIYDIMQKCWEEKFE
IRPSFSQLVVLMGNLLVDCYRKRYQQVDEEFMKSDHPAVVRTRPTIPGLNNARLTPSSPT
GSILYTAVHQNGGENDYIIPLPDPKPETTCDLPQEASISRASSTLNEANTSSTISCDSPL
GLRQDEEQESDPQPGCQEPTTGHQEVEESFL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggtgctggaggggggcagagggaaggtctgtacccatgctggcagggaggagaggatg
gtgaggggtataacacagatggagagctgggacttcacctcggtggctgcaaggttggtg
gtctctgagggttggtgcagtgaggtcacattcatttacagcctgaatttcacctcagtc
cttccatcctacccacccccagctcgattcggccaccgagccacagagcccgccatgctg
cgcccctctctgaagacatctctctggcttctcatcctcaccggtctgctggaggtaaca
tccgggggcagcgggctgcacatcgaacccagagacactgagcttgtcctcagcctccac
agcaccttctccctcttgtgctatggggacggcacgctggtctgggaacgggagggtcag
cccctcgccgcctcgctggagcacagggatggtgtcttcgtcagcaatctcaccctcagg
aacgtgacgggccgtcacaccggggagtacgtgtgcacctacagccctgaccaggctcca
gagccagcagagaggaaagccctgtacatctacgttccagatccctccctagtcttcctc
cccacaatcacctctgaagagctcttcatcttcatcacgggctacacagaggccgtcatc
ccatgccgcgtgaccaacccgcagatgcaggtgaccctctatgagaaaaaggtggagaac
cccatcccagctgcttatgacccacaacagggattcaaaggcttctttgaggataagacc
tatttctgccggacaatcgtggatgaccaggaggtggattcagacaccttctatgtctat
aggatccaggtctcatctgtgaacgtctccatcagtgcagtgcagactatagtgcgtcag
ggagaaaacgttaccttgatgtgcaccgtgagcggcaatgaactagtcaacttcaactgg
gattatccccgcaagcaagcagggaaggctgtggagctggtgaccgacttcctgcccgga
tccacccacgagatccgctccatcctcatcatccagaatgcagagctggaggacagcggg
acctacgtctgcaacgtctctgagggctaccatgagaaaacggaccggaaagacatcacg
gtccatgtgatcgagcatggctttgtgcgcttccacacccacctgcccagcacggtgtat
gctgaggtccacaagagccacacaatccaggtggaggtggaggcctatccgcaacccagc
atcgtgtggctgaagaacaacaagacattgaccatggagagcagcagcgagttcaccatc
accagcaggaacctgtcagaaaccaggtaccagacggctctggtgctggtgcgggtgaag
caggaagaaggaggattttataccatcagggcttccaatgaagatgatgagcaggagctg
tccttccatctgcagataaatgtgccagccaaagtggtagatctcaaggagaacagcagt
gccagcagtggggagcagaccgtaacatgctctgctgaaggcatgccccagccagagatc
agctggtctacttgcagtgacatcaaatggtgcagtgccaaggggcagcccacccggctg
ctagggaacgagtctgcggagatcggtctgcagaccaatgccacataccacgcggagctg
caggtgtaccgcgtgaacagcaccctgcagctgcacagggtggatgagcccctgctcctg
agatgcaccgtgcaaaacttcctgggcaccaactcccaggacatcactctggtcccacat
gccttgccgttcaaagtggtcatcatctctgtcatcctggccttgctggtcctcactgtc
atctccctgatcatcctgattgtcctgtggcagaagaaacctcgttatgaaatccgctgg
aaggtgattgagtcagtcagctctgatggacatgagtacatctacgtggatcccatgcag
ctcccttatgactccagctgggaggtgcccagggacaagctggtgttaggacgcactctc
ggctccggtgcctttggtcgcgtggtggaggcaacagcccatggcctgagccattcgcag
tccaccatgaaagtggcagtcaaaatgctcaagtccactgcccggagcagtgagaagcaa
gccctcatgtccgagctgaagatcatgagccacttgggacctcacctcaacatcgtcaac
ttgctgggggcctgcaccaaaggagggcccatctatatcatcaccgagtactgccgctat
ggggacctggtggactacctgcaccgcaacaagcacactttcctgcagtcctacggagag
aaggcacggcgagaggtagaggtgtatgggaacaccgccaaggaggaccatgtgcagagt
cacctctccttgtctgtggagagcgacgggggctacatggacatgagcaaagatgactcc
ctggattacgtgcccatgtctgacatgaagggggaagtcaagtatgctgacatcgagtcc
tctaactacggcaccccgtacgagctggacagctattccccatcagctcctgaaagaaca
gaccgggtgacactgataaacgagtctccgctcctcagctacatggacttggtgggcttc
agcttccaggtggccaatgggatggagttcctggcttccaaaaactgtgtgcatcgtgac
ctggctgccaggaacgtcctcatctgcgagggaaagctggtgaagatctgtgactttggc
ctggcaagggacatcatgagggattccaactatatctccaaaggcagcaccttcttgccc
cttaagtggatggctccagaaagcattttcaacaacctctacaccaccttgagcgatgtg
tggtccttcgggattctcctctgggagatattcactctaggggggactccataccccgaa
ctgcctatgaacgaacagttctacaacgccatcaaacgcggctaccggatgtcgaaaccc
acccatgcctctgatgaaatctacgatatcatgcagaagtgctgggaggagaaatttgag
atcagaccatccttctcacagctggtggtgcttatgggaaacctcttggtggattgctac
agaaagaggtaccagcaggtggatgaagagttcatgaagagtgaccaccctgctgttgtc
cgcacaagacccacaatccctgggttgaacaacgccaggctcactcccagctcccccacc
ggcagcatcctctacacagcagtgcaccagaatgggggcgagaacgattatatcatccct
cttcccgaccccaaacccgagacaacctgcgatctccctcaggaggcctccatcagccgg
gccagctctaccctgaacgaggccaacacatcgtctacaatatcctgtgacagccctctg
ggcctccggcaggacgaggagcaggaatccgacccacagccaggctgccaggagccgacc
acagggcaccaagaggtggaggagagtttcctgtag
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