Calonectris borealis (Cory's shearwater): 142089789
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Entry
142089789 CDS
T11211
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04510
Focal adhesion
cbor04512
ECM-receptor interaction
cbor04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142089789 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142089789 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142089789 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cbor00535
]
142089789 (COL9A3)
Proteoglycans [BR:
cbor00535
]
Extracellular matrix (ECM) proteoglycans
Others
142089789 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
142089789
NCBI-ProteinID:
XP_075022798
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All DBs
Position
17:14890006..14932076
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AA seq
691 aa
AA seq
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MAGFSALGLLFLCQLLATTSAQRVGPQGPPGPQGPPGPSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGAAGEAGLPGLPGVDGLTGTDGPPGPNGPPGDRCIRTCRATWTSWQRTTRTSRA
SRTQRAPRWKRISGSSSGCARHYKLYQCPRAMLFLLSAYAGSPQSTSAMPKGPSGLPGFP
GPPGPPGPPGLPGTLPDGGGDLQCPALCPPGPPGPPGMPGFKGHTGHKGEPGEIGKEGEK
GNPGPPGPPGIPGSVGLQGPRGLRGLPGPMGPAGDRGDIGFRGPPGIPGPPGKAGRPGPK
GNPGARGLIGEPGMPGKDGRDGAPGLDGEKGDAARMGAPGEKGPNGLPGLPGRAGIKGSK
GEPGSPGETGEAGPSGEPGIPGDVGIPGERGLPGPRGATGPLGLQGPTGAPGVRGFQGPK
GASGEPGLPGPTGIRGELGDRGPTGVPGPKGNQGIAGADGLPGDKGELGPFGPPGQKGEP
GKRGELGPKGVQGPNGTAGVPGIPGHPGPMGHQGEQGVPGITGKPGPPGKEASEQHIREL
CGEMINDQIAQLAANLRKPLSPGMTGRPGPAGPPGPPGATGSLGHPGPRGPPGYRGPTGE
LGDPGPRGDTGEKGDKGPVGQGIDGPDGDQGLQGPPGVPGITKNGRDGAQGEPGLPGDPG
TSGAIGAQGTPGICDTSACMGAVGASTSKKS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctccgctcttgggcttctcttcctatgtcagctgttggccacaacatcg
gctcagagagtaggaccacaaggccctcctggaccacaaggacccccgggaccatctggc
aaggacggcatagatggagagccaggccctcctggattgccaggcccaccagggccaaag
ggtgcaccagggaagcctggagcagctggtgaagccggattgcctggccttcctggagtg
gatggtttaacaggaaccgatggcccacctggcccaaatgggcctccaggagaccggtgc
attaggacctgccgggccacctggaccagctggcaaaggactaccaggacctccagggcc
tccaggacccagcgggctcccaggtggaaacggatttcggggtcctcctcgggatgcgca
agacactacaagctctaccaatgcccacgggcaatgctgttcctcctgtcagcttatgca
gggtcaccccagtcaaccagtgcaatgccaaagggaccttctggtctgccaggattccca
gggcctcctggaccacccggacctcctggtcttccgggcacccttcctgatggcggtggg
gaccttcagtgcccagctctctgcccaccgggtcctccaggtcccccaggaatgccaggg
ttcaagggacacactggtcacaaaggagaacctggtgaaataggaaaagaaggagaaaag
ggcaaccctggccctcccggtcctccgggcattcccggcagcgttggcctgcagggccca
agaggactaagaggcctccctggtccaatgggtccggccggcgacagaggtgacatcggt
ttcagagggccacctggaatcccaggacctccggggaaagctggtagacctggaccaaaa
ggaaacccaggggctcgtggactcataggagaacctggcatgcctggcaaggatggacgg
gatggagctcctggactcgatggtgagaagggtgatgcagctcgcatgggtgctcctgga
gagaaggggccaaacggactgcctgggctgcctggaagagcaggtattaaaggctcaaag
ggtgaaccaggcagtcctggagagacgggagaggcgggtccctctggagagccaggcatc
cctggcgatgttggtattcctggtgagagaggtctgccgggacccagaggagcaactggc
ccacttggtcttcaaggcccgacgggagcccccggggtcagaggtttccagggtcccaaa
ggtgccagtggggagcctggccttcctggtccgactggaattcgcggggagttaggtgac
aggggccctactggtgttcctggtcccaaaggtaaccagggcattgctggagcagatggc
ctcccaggtgacaaaggagaactgggtccctttggtccccccggccaaaaaggagagcca
ggaaaaagaggagagcttggtccaaaaggtgtccaaggacctaacgggacagctggagta
ccagggatcccaggacatccagggcccatgggccatcagggggagcaaggtgttcccggc
atcacgggaaaacccgggcctcctggcaaagaggccagtgaacaacatataagagaactc
tgtggggaaatgataaatgatcaaatcgcacagttagctgctaatctgagaaagccgttg
tctcctggaatgacgggacgtcctggcccagctggtcctccgggtcctcctggagctaca
ggaagccttgggcatcctggtcctcgtggtccccctggatacagagggccaacaggagaa
cttggtgatcctggtcccagaggtgacactggcgaaaagggagataaaggacctgttggc
caaggtattgatgggcctgacggcgatcaaggacttcaaggaccacctggtgtacctgga
attactaaaaacggtcgtgatggtgctcagggtgaacccggtcttccaggggatcctggt
acttctggtgctattggggctcagggaactccaggaatatgtgacacgtcggcttgcatg
ggagctgttggagcatcaacttccaaaaaatcataa
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