Calonectris borealis (Cory's shearwater): 142090520
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Entry
142090520 CDS
T11211
Symbol
TRPV1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
142090520 (TRPV1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cbor04040
]
142090520 (TRPV1)
Ion channels [BR:
cbor04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
142090520 (TRPV1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
142090520
NCBI-ProteinID:
XP_075024646
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Position
19:complement(4807146..4819380)
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AA seq
843 aa
AA seq
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MSSILGKMKKFGSSDMEESEVTDEHTDGEDSVLETPDSLQGTISTKVQPPKSNIFARRGR
FVIGDSDKDMAPMDSFYQLDHLMAPSVIKFHANLERGKLHKLLSTDSITGFSEKAFKFYD
RRRIFDAVAQGNTRDLDDLLLYLNRTLKHLTDDEFREPGTGKTCLLKAMLNLHDGKNDTI
PLLLDIARKTGTLKEFVNAEYTDNYYKGQTALHIAIERRNMYLVKLLIQNGADVHARAHG
EFFRKIKGKPGFYFGELPLSLAACTNQLCIVKFLLENPYQAANIAAEDSMGNTVLHTLVE
IADNTKDNTKFVTKMYNNILILGAKINPILKLEELTNKKGLTPLTLAAKTGKIGIFAYIL
RREIKDPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEIIAYSSETPNRHEMLL
VEPLNRLLQDKWDRFVKHLFYFNFFVYTMHIIILTTAAYYRPVEKKEKPPFTFGHSTGEY
FRVTGEILSVLGGLYFFFRGIQYFVQRRPSFKTLIVDSYSEVLFFVHSLLLLSSVVLYFC
GQELYVASMVFSLALGWANMLYYTRGFQQMGIYSVMIAKMILRDLCRFMFVYLVFLLGFS
TAVVTLIEDDNEGQDTNSSEYARCCHMKRGRTSYNSLYYTCLELFKFTIGMGDLEFTENY
RFKSVFVILLVLYVILTYILLLNMLIALMGETVSKIAQESKSIWKLQRAITILDIENSYL
NCVRRSFRSGKQVLVGVTPDGQDDYRWCFRVDEVNWSTWNTNLGIINEDPGYSGDLKRNP
SYSIKPGRVSGKNWKTLVPLLRDGTRREETQKLPEEVKLKPVLEPYYEPEDSETLKESIP
KSV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccattcttgggaagatgaagaaatttggcagttctgacatggaggaatctgaa
gtgacagatgaacacacggatggagaggactccgtgctggaaacacctgatagtctccag
ggtacaatcagcaccaaggtgcagccacccaaaagcaacatctttgcaagacgtgggcgg
tttgtgataggggatagtgacaaggacatggctcccatggactccttttaccagctggat
cacctgatggcaccttctgtcatcaaattccatgccaatttggagagggggaaacttcac
aagctcctatctacagattccatcacaggcttctcagaaaaagctttcaaattttatgac
cgcagaaggatctttgatgccgtagcccaaggcaacacaagggacctggatgatctgcta
ctctatcttaatagaaccttgaagcatctcacagatgatgagttcagagagccaggaact
gggaaaacctgcttactgaaagccatgctgaatctacatgatgggaaaaacgataccatt
cccttgctgctggatattgcaaggaaaactggaactctgaaagagtttgttaatgcagag
tatactgacaactactacaagggccagactgcacttcacatcgccattgagaggaggaac
atgtacctggtgaagctcttgatccagaacggagcagatgttcatgcaagagcccatggg
gagttcttcaggaaaatcaaagggaagcctggcttttattttggggagctgcctttgtcc
ctggctgcctgcaccaaccagctctgcattgtaaaattcctccttgagaacccctaccag
gcagccaacatcgccgctgaggactccatgggcaatacggtcctgcacacattggtggag
attgcagataatactaaggataataccaagtttgttaccaagatgtacaataacatattg
atccttggtgccaaaatcaatccaatcctgaagctagaagaactcaccaacaagaaaggg
ctgactccattaactctggcagccaaaacagggaagatagggattttcgcttacatcctc
agacgagagatcaaagatcctgagtgcagacacttgtctaggaagttcactgaatgggct
tatggacctgtccactcatctctttatgacctgtcctgtatagacacatgcgagaaaaat
tcagtgcttgagattattgcctacagtagtgaaacgccaaaccgtcatgagatgctgctg
gtggaaccccttaacaggctgctgcaagacaagtgggaccggtttgtcaaacacttattt
tacttcaacttctttgtctataccatgcatatcatcatcctcaccacagctgcttactac
agacctgtagagaagaaggaaaagcctcccttcacgtttggtcacagcactggggaatat
tttcgagtgactggagagatcctgagtgtactgggaggtctctatttttttttcagaggg
atacagtatttcgtgcagaggcgcccgtcattcaagacgctgatagttgacagctacagt
gaggttcttttctttgttcactccttgctcctcctgagctctgtggtgctgtacttctgt
ggccaggaactgtacgtggcttccatggtcttctccttggcgctgggctgggctaacatg
ctgtactacacccgtggcttccagcagatgggcatttactctgtcatgattgccaagatg
atccttagagatttatgtcgcttcatgtttgtctatctagtattcctcttgggattttct
acagctgtggtgactttaattgaagatgacaatgaggggcaagacacaaatagctctgaa
tatgcccgatgctgccatatgaaacgaggccgcacatcctacaatagtctgtattatacc
tgcttggagcttttcaagttcactattgggatgggggacctggagttcacagagaactac
aggttcaagtctgtgtttgtcatccttttggttctctatgtcatccttacatacatcctc
ctactcaatatgcttattgcactgatgggggaaactgtgagcaaaattgcacaggagagc
aagagcatctggaaactccagagagccatcacaatcttggatattgaaaacagctacttg
aactgtgtgaggcgctcgttccggtctgggaagcaagtcttggtgggggtcacacctgac
ggccaagatgattacagatggtgctttagagttgatgaagtgaactggtccacatggaat
actaatctgggcataatcaatgaagaccctgggtactccggggacctcaaacgaaatccc
agttactctattaagcctggcagagtttcagggaaaaactggaaaacattggttccgctt
ttaagagatggaaccaggagagaagagactcaaaaactaccagaagaagtcaaattaaaa
cctgttttggaaccttattatgagccagaagattctgagacgttgaaggagtcaattcca
aagtcagtctaa
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