Clostridium botulinum E3: CLH_1397
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Entry
CLH_1397 CDS
T00767
Name
(GenBank) cold-shock deAd box protein a
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbt
Clostridium botulinum E3
Pathway
cbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLH_1397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbt03019
]
CLH_1397
03009 Ribosome biogenesis [BR:
cbt03009
]
CLH_1397
Enzymes [BR:
cbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLH_1397
Messenger RNA biogenesis [BR:
cbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLH_1397
Ribosome biogenesis [BR:
cbt03009
]
Prokaryotic type
rRNA helicases
CLH_1397
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
CMS1
OST48_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACD52010
LinkDB
All DBs
Position
complement(1492416..1493519)
Genome browser
AA seq
367 aa
AA seq
DB search
MNFKSLGINENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIF
QNISPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKHNV
HLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQTLCF
SATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQEDNPF
MAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAA
RGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSSLLNAIETKLGF
TIPRREI
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaaatctttaggtataaatgaaaatatagttaacatactaaataaaaatgga
attaaaactccaactgcaattcaagaagaaagtatccctaaaattttatcaggtaaagat
gttattggtgaagctaaaactggaactggaaaaaccctagcttttcttcttcctattttt
caaaacatatcacctgatactaatggaacacaggtattaatcctatcccctactagagaa
ttagctattcagataacagaagaaacaaaaaaacttaatgtaaataatgacattaatata
ttagctgcctatggtggtaaagatattggaagtcaattaaaaaagcttaaacataatgtc
catttagttattgccactcctggtagactacttgatcatattgatagaaaaactattgat
ttatcaaaactaaaaactatagttatcgatgaagctgatcaaatgctattaatgggattt
aaaaatgatattgaaaaaattatgaaagtagcttcaaaaaagcatcaaacactttgcttt
tccgctactatggattcacaagttaagaagcttgcctatagatatatgattgacccatta
tttatagatataaaatcaccaactatagctgttgataaaatcaagcaacaagttgtagaa
actactgatagatggaagcaagattcgctttgtgctactttacaagaagataatccattt
atggcaatcatattttgtagaactaaacgtagagctgatgtacttgaaattgctcttcat
caaaaaggtcttaactgtcaaaaaatacatagtgatgttcctcaagctaaacgtgagaga
ataatgaaatcttttagaaatgctgatattcaatacctaatagcaacagatgtagctgca
agaggaattgacatttctggagtatcacatatttacaactatgatactccagaaactcct
gaaagttatattcatcgtataggaagaactggtcgtgctggtgaagatggttatacgtgc
atgttcgttgcaccaaaagattcaagtcttttaaatgcaatagaaacaaaattaggattt
acaatacctagacgtgaaatctaa
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