KEGG   Clostridium botulinum A2: CLM_1936
Entry
CLM_1936          CDS       T00883                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cby  Clostridium botulinum A2
Pathway
cby03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cby00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLM_1936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cby03019]
    CLM_1936
   03009 Ribosome biogenesis [BR:cby03009]
    CLM_1936
Enzymes [BR:cby01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CLM_1936
Messenger RNA biogenesis [BR:cby03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLM_1936
Ribosome biogenesis [BR:cby03009]
 Prokaryotic type
  rRNA helicases
   CLM_1936
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Terminase_6N AAA_19 Flavi_DEAD DsrH Peptidase_C93
Other DBs
NCBI-ProteinID: ACO85410
UniProt: C1FNS0
LinkDB
Position
1987378..1988643
AA seq 421 aa
MNNSFDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLP
IFEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKL
KEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQ
LMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAA
TNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSS
DLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEK
EFNINIEEKKIYKGTLISSKGERSSQPKSKNKSTSAHKDNNKKKRSSSINKSKNNHKKKK
Y
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaataattcatttgatacattaaatttgaatcctaaattagttcagggactaaaaaag
ttaaatataaatatacccacagaaattcaagctaaagctatacccttagctatggaaaat
aaagatataataggtcagtcagaaacaggtacgggaaaaactttagcctatctattgcct
atatttgaaaaaataactacagaaaaaagagaaatgcaagctattatattagctcctact
catgagttagctatgcaaataaataatgaaataaaaaatatatcttcaaattcaaatatg
gatgtaaaatctatggctataataggagaagcaaatataaaaagacagattgaaaaatta
aaagaaaagccacatattattgtgggatctccaggaagaatattagagcttataaagaaa
aaaaagataactgcccatacagttaaaactatagttatagatgagggagataaactttta
gataagaataatttaaaagtagtaaaagaagtaataaaaacaactctaagagaaagacag
ttaatgttattttcagctacaataactgaatctactttaaatattgcaaaggatttaatg
aaagattcagaagtagtaaaagttaaagaaaaaaatactgtaaatgaaaatattaagcat
ttatatattactggagagcatagggaaagaattgaaattttaaggaaacttatagcagct
acaaatcctaaaagagctattgtatttataaatagaaatgaagaaatagaattaactaca
ctaaaacttcaatatcataaaattaaagcctatggtatatatggtgctgctgaaaaagag
caacgtaaaaaagctttagaagattttagatcaggaaaagttcaaatattagtttcatca
gatttatcagccagaggactggatgtaaaagatataactcacatattcaatttagattta
cctgaaaatccaaaggaatatttgcatagagtaggaagaacaggaagagcttctaaggaa
ggaattgctatttcaataataacagaaaaagagaaagcattgataagaaagtatgaaaaa
gagtttaatattaatatagaggaaaaaaagatttataaaggaactttgattagctctaag
ggagaaagatctagccaaccaaagagtaaaaacaaatctacttcagcacataaagataat
aataaaaagaaaagaagtagctctataaataaatcaaaaaacaaccataaaaagaaaaag
tattaa

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