Chryseobacterium camelliae: PFY12_06935
Help
Entry
PFY12_06935 CDS
T08762
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFY12_06935 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccab03021
]
PFY12_06935 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccab03400
]
PFY12_06935 (rpoB)
Enzymes [BR:
ccab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFY12_06935 (rpoB)
Transcription machinery [BR:
ccab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFY12_06935 (rpoB)
DNA repair and recombination proteins [BR:
ccab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFY12_06935 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WBV61852
UniProt:
A0ABY7QQE4
LinkDB
All DBs
Position
complement(1509544..1513365)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTATTRGNQRVNFSSAKGKIITPDFLDIQIESFSEFFQLDTLPEDRTNEGLYKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINRLGFIETPYRKVEDSKIDLAADPIYLNAEDEEDKVIAQANVELSDNGEFLTDRII
ARLDGDYPVVEPAQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVARDSRILINAEGTGTVEYVDADKIIIKYERSEDEDLVQFESATKTYN
LTKFRKTNQSTTITLRPNVRVGDVVEKGQVLCDGYATEKGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVTNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGSDWTVDHDKNELIKQLIHNYKIKFNDIQGVKNREKF
ALSIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGLKFATPIFDGASLDQITEYTEKAGLPKFG
HTHLYDGGTGERFTQAATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagctacaactagggggaatcagagagtgaacttctcttcagcgaaa
ggaaaaattattactccggacttcttggatatccaaatcgagtctttcagtgagtttttc
cagctagatacccttccggaagacagaacaaacgaaggtttgtataagaccttccaggaa
aatttcccgattactgattctagaaaccaattcgtattggagtttttagattatctggta
gattctccacgttattcaattgatgagtgtgtggaaagaggattgacgtattcagttcct
cttaaagcaagacttaaattgtattgtacagaccctgagcacgaagatttccaaacggtg
gttcaggatgtatatttaggtccggttccttacatgactcctagtggatctttcatcatc
aacggtgcagaaagagttattgttacgcagcttcatcgttcacctggtgtattcttcgga
caaacttaccacgcaaacggaactaaattgtactattcaagaattatccctttcaaagga
tcttggatggaatttacaaccgatatcaacagcgtaatgtacgcgtatatcgaccgtaag
aaaaaattaccattaacgactttattaagagcgatcggttacgaatctgataaggatatc
cttcagatcttcgaccttgctgaagaagtgaaagtttctaaagctgcccttaaaaaagta
gaaggaagaacattggctgcgagagtattgaacacttggttcgaagatttcgtagacgaa
gataccggtgaggtagtttctatcgaaagaaacgaaatcatcttggatagagaaaccatt
cttgaaaaagaacatttggatcttatcttggatgctggtgtgaaatctatcctgattcac
aaagaaaacagcaacgagttctctatcatccagaatacattacaaaaagaccctactaac
tctgaaaaagaagcggtagagtatatttatcgtcagttaagaaacgcagatccgccagat
gaggaaacggcaagaggaatcattgaaaaattattcttctctgagcaaagatattcatta
ggtgaagtaggacgttacagactaaacaaaaagttaggtctaaacattcctactacaact
gaggtgcttacaaaagaagatatcattgcgattgtaagacacttgatcgagcttgtaaac
tctaaagcagaggttgatgatatcgatcacttatcaaacagaagaattaaaactgttggt
gagcaattggcaggacagttcggtgtaggtctttcaagaattgcaagaacaatcaaggaa
agaatgaacgttagagataacgaaatctttactccgcttgatcttgttaatgctaaaacg
ttaacatcagtaattaactcgttctttggtaccaaccagctttctcagttcatggatcaa
accaacccattgtcagaaatcacgcacaagcgtagactttctgctctaggacctggaggt
ttatcaagagaaagagcaggtttcgaggttcgagacgttcaccatactcactacggaaga
atttgtccgattgaaactccggaaggaccaaacatcggtttgatttcatctttaggtatt
tatgctaaaatcaacaggcttggattcatcgaaactccatatagaaaagtagaagatagt
aagattgatcttgctgctgatcctatctatttgaatgcagaggatgaagaagataaagta
attgctcaggcaaacgttgaattgagcgataacggggaattcttaacagacagaattatt
gcaagattagatggtgattacccggtagttgaaccagctcaggtgaacctgatcgacgtt
gcaccaaaccagatttccggtatttcagcttcgttgattcctttcttggagcatgatgat
gcgaaccgtgcgttgatgggatcgaacatgatgcgtcaggccgttcctttgttgaagcca
caagctccaatcgtaggtacaggtctggaacagcaggttgcaagagattcaagaatcttg
attaacgctgaaggtacaggtactgtagagtatgtagatgctgataagattatcattaaa
tatgaaagaagcgaagacgaagatttagtacaattcgagtctgctactaaaacatataac
ttaactaagttcagaaaaacaaaccagagtacaacgattaccctaagaccaaacgtaaga
gtaggtgatgtagtggaaaaaggacaggtactttgtgacggttatgctactgaaaaagga
gaattggctcttggtagaaacttggtggttgcgttcatgccttggaaaggatacaacttc
gaggatgcgatcgtaatcaacgaaaaagtggtacgtgaagactggtttacttcaatccac
gtggatgaatattctcttgaagttcgtgatactaaattaggtatggaagaacttacagca
gatattccaaacgtttctgaagaagctactaaagatcttgacgaaaacggtatgatcaga
attggtgctgaagtgaagcctggagatatcatgatcggtaagatcactccaaaaggtgaa
tcagatccaactcctgaagaaaaacttcttagagcaatctttggtgataaagcaggtgat
gtgaaggatgcttcattgaaagccgactcttcattaagaggggttgttatcaacaaaaaa
ttgttctcaagaaacattaaagataaaaagaagagaactgaagaaaaacttaaacttgaa
gagattgaaaacacttacaaggctaagtttgatgagttgagaaatactttaattgaaaaa
ttaaatacactggtaagcggtaaaacttctcaaggggttaccaacgacctagatgaggaa
atcatcggtaaaggtgtgaaattcactcataaattattgacttcagttgaagattacgta
aatgtaagcggttcagattggactgttgaccacgataagaatgaattgattaagcaattg
attcacaattataaaatcaaattcaacgatattcaaggagttaaaaaccgtgagaagttt
gcactttcaatcggggacgaattaccggcaggtatcatgaagttggctaaagtttatatc
gctaagaaacgtaaactgaatgtaggggataaaatggcaggacgtcacggtaacaaaggt
atcgtttcaagaatcgttcgtgaagaagatatgccattcctggaagacggaacaccggta
gatatcgtattgaatccacttggggtaccttcccgtatgaacatcggtcagatttatgaa
acagttcttggatgggctggtcagaaattaggattgaagttcgctacaccgatcttcgac
ggagctagtctggatcagatcactgagtacactgagaaagcaggtcttcctaaattcggt
cacactcacctttatgatggtggtaccggagaaagatttactcaggctgcaacggtaggt
attatctacatgttgaaactgggtcacatggttgatgacaaaatgcacgcacgttctatc
ggaccttactcattgattactcagcagccgttaggaggtaaagctcagttcggaggtcag
agattcggagagatggaggtttgggctcttgaagcattcggagcatcaaatatcttgaga
gaaattttgactgtgaagtcggatgacgtgattggtagagcgaaaacttatgaagctatt
gcaaaaggtgaatcgatgcctgaaccaggtatcccggaatcattcaacgtattacttcac
gagttacaaggtcttggattagacgtaagactagaggaataa
DBGET
integrated database retrieval system
