Cutaneotrichosporon cavernicola: CcaHIS019_0703990
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Entry
CcaHIS019_0703990 CDS
T09540
Symbol
CDC39, CcaverHIS019_0703990
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccac
Cutaneotrichosporon cavernicola
Pathway
ccac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CcaHIS019_0703990 (CDC39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccac03019
]
CcaHIS019_0703990 (CDC39)
Messenger RNA biogenesis [BR:
ccac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CcaHIS019_0703990 (CDC39)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CcaHIS019_0703990 (CDC39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
85498688
NCBI-ProteinID:
XP_060460083
UniProt:
A0AA48QYY2
LinkDB
All DBs
Position
7b:join(438296..438520,438592..443250,443287..445146)
Genome browser
AA seq
2247 aa
AA seq
DB search
MSHPPPGLGGGVARTGPPPGFGNNVQGGAGNSPGAGGGGSGANGGTAAIVRAQIVFLLST
LSEDTFDKASQELRTMASNHGPEMYHHFVRRTAVVAAPVIQTLVQHSQQYKDDPSAPPPQ
ISTTDHAALAWRLLATEAVRAARDVSLAPHYVATMLSPSQGTPLPLPNLRLFNLSPAVLF
SLSALALANPQVFPNTNPAYDAVKNDLHQTYQGAMEILGSNMPFWAGNIPGQPQDDISMQ
EARILILALYPCSSPSSDDKLARPASPINPTLPHHTILNSLQRGFMLQVLTHKFNGPIIL
HNTLPALQPGGAPRTVGAIPLEDILFELGETITQDETTVAAVIKCWWGPYILDEPVPQAV
FDEVVHTLHGLCRGLHEGRTTDTLAVMKALVETTKPANIHWDDVVKSFDTPSTPLAYSAA
LMLAANLLLVPPQTPVPPIAALLPASTSDRTWINMSSLLYVLRNLSQLPPDSLNLYTSPT
SPPPEAMARIVEPYPAETKVSKAVRQQAKDVQAAGLWNTLGLIQVLTRACTMADSEEGPE
REDRIEVGRRATELLDRAASLAPELVLIGLEKLPKPLPPPIQAMHQKILEIYLVNPYADL
ASAPLVFQQLWDLNPSGLLKDLGEFYGEDENNLGKVVEIAWDLNIMDKLLESENVHFALD
VATLAASKDYFHLGDWLADTVSVRDHDFLLAIFDFIEHKVRLEIDHQHQPESVPNLMFTL
SDDAYSIFIRVLRNAENLAAEDVRRFKILRTDVLILHPRLLNLRPGSKEEQGFAVATYSK
TISSQVDDMYRRMYSEDDDLTLDSVIDQLTQYSKSSDTREQELFAAALHSLFDEYKFIKT
YPHRELTMTGILFGAIIDCRLVKDTPAFVATRYVADACKTAPHEPPYQFGVSALGVLRAS
LVDFPGLCRSLLEIPALHESHPSYIQEIQAAVAEREELDQQGGVKLAFPALKLPILIEEG
DDQFREPDPMTRDKIMFIVNNIAPGNYETKSLDLLNLFEDQWSRWFAQYFIDVRVSMEAN
RHDLYYKILELLNNPLLERHVLWETYRKARDLLNDEKTLTSTSDRQHLKTVATWLGRITL
GRRLPIKYRELSLKDLLIQGYDNKRLIVAIPFVCNVLAACQGSLVFRQPNPWFVAIIRVL
VEMYHYGDLKLNMKFEIEVLFGKLDIQLESVAPSEVLRTHVPPPQPQQNVPNRLEQELQR
HLNTNESSNGGQRFNDTNFDEHYTRLQALQNEHAVQQAHEQFMNHVEQLIADLPEQLRFN
SDLGVLQAPTFKRIVFHSIERAIREIVAPVVERSVTIAGISSRDLVQKDFGTEGDSTKMR
KAAHLMVQNLAGNLALVTCKEPLRTSLMSHIRSLVSQNGFTEENVPDGVIAGVVNENLDI
ACNVIRRAAMEKATRDIDVNLQPQFAARKAHRDSRSQQPFWDGASFGVAISHTALPDPLR
LRQGGLTAQQLRVYEDFAESARPELQAAQQAGAHVNGGEGYLQNYRELGFTEGNLAPAEA
KRGPSPRFQDVLEPTETAVTLAPQNSIEKIHEVIGEIEKVIVNTPAQGLNQLEDDHDLRN
FMRNVIVIGQSSRESSTLNIAQKIVQLLYKTDSPLGREVYTVLLQQLCVVQPKVDREVKQ
WLVYAEDPRKFSVPVTAVLIRASFIRVPELDAQLAKQMSRGYSPDLINFIAQLIRECSLG
PQAIVTRNAFAMCVTQLLKAQDHGQLTPAADQLLDDLRGESIHDNKATTVDPSVQERLQH
YFFEWVRLFTENPTSPEVSFVPYITWLQNDNILSGEDVSTAFYTSAIKAAVECDMKSENG
QWFGTDSLAKLIILIVKNYGDKSGPGSVTRTVYYFNKIVTIMSYSLVRAQLNPDEPFDQR
PWARFFTSMLAEIASIEASLPETALGCLKSIANVLGIVQPTYAPRFAFGWFSIVSHRLFM
AKLLVAPRQEGWADYHRTLMWLLRFMSPFITADADDNNNNMGLAARSLYKATLRILLVLM
HDFPGFLVECYHTLSTAIPAHCVQLRNIILAAFPAAEAPLPDVYKRLEELVPEMQTFPRV
RSDHVSALNSGNVKNAIDSFVHNTSPNGALIVSELKNRIAVQKVLPDNATTTVWNHTLLH
ATVFYLGTSAVHRHYMHTGVADFDHKDPAVSLLLGLAHSFDAEGQYLILSVIADQLRFPS
AHTSFFAQLMLYMFKVSTDPLIAMRIARVLLERVIVARPHPWGLIVTFVELLENPAYGFW
DQQFVRADDEIFLMFRRAREGFGAQPL
NT seq
6744 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaccctcctcccggactgggaggcggggtcgccaggaccggccctccgcctggc
tttggtaacaatgtccaaggtggcgctggaaacagcccaggcgctggtggtggcggcagt
ggggccaacggtggcaccgccgcaatcgtgcgcgcccaaatcgtcttccttttgagcacc
ctttcagaagacacgtttgacaaggcatcgcaagagctccgcacgatggcaagcaaccac
ggccccgagatgtaccaccactttgtgcgccgcacagccgttgttgctgcgcctgtcatc
cagacgctcgtgcaacactcgcagcagtacaaagacgacccctctgcgccgccgccgcag
atctccaccaccgaccatgccgctttagcctggcgcctccttgcgactgaagctgtccgc
gccgcgcgcgacgtgtcgctcgcgccccactacgtggccaccatgctctcgccgtcgcag
ggcacgccgctccctctgccaaatctgcgtctcttcaacctctcgcctgccgttctgttc
tcgctttcggcgcttgccctggccaacccgcaagtgtttcccaatacgaaccctgcctac
gacgccgtcaagaacgacctgcaccagacataccagggtgcgatggagattcttggttcg
aacatgccgttctgggctggcaacatcccaggccaaccgcaggacgacatctcgatgcaa
gaggcccgcatcctcattcttgcgttgtacccctgttcgtcaccttcctccgacgacaag
ttggcacgcccagcctctccgatcaaccccactctccctcaccataccatcctgaactcc
ctccagcgcggcttcatgctgcaggtcctcacccacaagttcaacgggcccattatcctg
cacaacacgctgcccgcactccagcccggtggcgctcctcgcacggttggcgcgattcct
ctcgaggacatcttgttcgagctcggcgagaccatcacccaagacgagaccacagttgcc
gccgtgattaagtgctggtggggtccctatatccttgacgagcccgtcccacaggcagtc
tttgacgaagtcgtacacaccctccacggtctgtgtcgcggcctacacgaaggcaggacc
accgacacgttagccgttatgaaggcgctggtcgagaccaccaagccagccaacatccac
tgggatgatgttgtcaagtcgttcgacactccctctactccactggcgtactctgcagcc
ctcatgctggctgccaacctcctgttggtgcccccccagacacccgtgcctcccattgct
gcccttctcccggcctcaacttcggataggacgtggatcaacatgtcgtccctgctgtac
gtccttagaaacctgtcgcagttacctcccgactcgttgaacctttacacttcgccgact
tcaccccctcctgaggcaatggcgcgcatcgttgagccctacccagccgagaccaaagtt
agcaaggcagtccgccagcaggccaaggacgtccaggctgcagggctgtggaacactctc
ggccttatccaagtcctcacgcgagcttgcacgatggccgactctgaggagggccccgaa
cgcgaggatcgcattgaggttggccgtcgtgccaccgagctcctcgaccgcgcggcttcc
ctcgcacccgagctcgttctgatcggcctcgagaagttgcccaagccgcttccacccccc
atccaggcaatgcaccagaagatcttggagatctaccttgtcaacccttacgcagacctt
gcttcagcacccctcgtgttccagcagctctgggacctcaacccctcgggactcctcaaa
gacctgggcgagttctatggcgaggacgagaacaaccttggcaaggtcgtcgagatcgcg
tgggacctcaacattatggacaagcttctcgaaagcgagaatgtgcactttgcccttgac
gtcgccacccttgcagctagcaaggactacttccacctgggagactggcttgctgacact
gtctcggtccgcgaccacgacttcctgttggccatcttcgactttattgagcacaaggtc
cgcctggagattgaccatcagcaccagcccgagtcggtgcccaaccttatgttcacgctg
tcggacgatgcgtactcgatcttcatccgcgtgctacgcaacgccgagaaccttgcggct
gaggacgttcgccgcttcaagatcctccgcacagacgtactcatcctccacccgcgcttg
ctcaaccttcgtcccggatccaaggaggaacagggcttcgccgttgccacctacagcaag
acgatcagttcgcaggtcgacgacatgtaccgtcgcatgtactcggaggatgacgacctt
acgctggacagcgtcatcgaccagctcacgcagtactccaagtcgagcgacactcgcgag
caagagctattcgcggccgctctccactcgctctttgacgagtacaagtttatcaagacc
tacccgcaccgtgagctcacgatgactggcatcctctttggcgcgatcatcgactgtcgc
ctcgtcaaggacacgccagcgttcgttgctacccgctacgttgcagacgcctgcaagact
gcgccccacgagccgccctaccagtttggcgtcagtgctttgggcgtcctccgcgcatcg
cttgtcgacttccctggtctctgcagatcgctccttgagatccctgcgttacacgagtcg
cacccttcctatatacaggagattcaagccgcggtcgcagagcgcgaggagcttgaccag
cagggtggcgtcaagcttgccttccctgcgctcaagcttcccatcctcattgaagagggc
gacgaccagttccgcgagcctgacccgatgacgagagacaagatcatgttcatcgtcaac
aacattgccccaggcaattacgagaccaagtcgctggatctcctcaacctcttcgaggat
cagtggtcacgctggtttgcgcagtacttcatcgatgtccgcgtcagcatggaggccaac
cgccacgacctgtactacaagatcctcgagctcctcaacaatccgctgcttgaacgccat
gtcctctgggagacataccgcaaggctcgcgacttgctcaacgacgagaagacgctcacg
tctacctcagaccgccagcacctcaagacggtcgcgacatggttgggccgcatcactctc
ggccgccgactcccaatcaagtaccgcgaactctccctcaaggacttgctcatccagggc
tatgacaacaagcgcctcatcgtcgccatcccgtttgtctgcaacgttctcgcagcatgc
cagggctcgctcgtcttccgccagcccaacccgtggttcgtcgctatcatccgcgtcctc
gtcgagatgtaccactatggcgacctcaagctcaacatgaagtttgagatcgaggtgctc
tttggcaaactcgacatccagctggagtctgtcgcgccgtcggaagtgctccgcacccac
gttccgccgccccagccgcagcagaatgtcccgaaccgcctcgagcaggagctccagcgt
cacctcaacacgaacgagtcgtcgaacggcggccagcggttcaacgacaccaactttgac
gagcattacactcgcttacaggcgttacagaacgaacacgctgtgcagcaggcgcacgag
cagttcatgaaccatgtggagcagttgatcgccgacctcccggagcagctgcgcttcaac
tcggacctcggcgttttgcaagcgccgacgttcaagcgcatcgtcttccactcgatcgaa
cgcgccatccgcgagattgttgcgcccgtggttgagcgctcagttaccattgcgggcatc
tcgtcgcgcgacctcgtccagaaggactttggcaccgagggcgactcgaccaagatgcgc
aaggcagctcacctcatggtccagaacttggccggcaatctcgctctcgtcacctgcaag
gagccgctgcgcaccagcctcatgtcccacatccggtccctcgtgagccagaacggcttc
accgaggagaacgtgccggacggcgtcatcgcgggtgtcgtcaacgagaaccttgacatt
gcgtgtaacgtcatccgtcgcgctgcgatggagaaggccacgcgcgacatagacgtcaac
ctccagccgcagtttgccgctcgcaaggcccaccgcgactcgcgcagccagcagccgttc
tgggatggcgcgtcgttcggcgttgccatatcacacacggcgcttccagaccccctgcgc
ctccgccagggcggcttaaccgcgcagcagctgcgcgtgtacgaggacttcgccgagtcg
gcccgtcccgagctgcaggctgcccagcaggctggcgctcacgtcaacggtggtgagggc
tatctgcagaactaccgcgagttgggctttacggagggcaacctcgctcccgcggaagcc
aagcgcggcccgtctccgcgtttccaggacgtcctcgagccgaccgagactgcggtgacc
cttgcgccgcagaactcgatcgagaagattcacgaggttatcggggagatcgagaaggtt
attgttaacacgccggcccagggccttaaccagctcgaggatgaccatgacctgcgcaac
ttcatgcgcaacgttattgtgattggacagtcgtcgcgcgagtcgagcactctcaacatt
gcccagaagattgtgcagttactctataagaccgactcgcctctcggccgcgaggtctac
acggttctcttgcagcaactctgcgtcgtccaacccaaggtcgaccgcgaggtcaagcag
tggctcgtctacgccgaagacccgcgcaagttcagcgtgcctgtcacggctgtactcatc
cgcgcgtcgttcattcgtgtgcctgagctcgacgcgcagctcgccaagcagatgtcgcgc
ggctactcgccggatctcatcaactttattgcgcagctcattcgcgagtgctcgctcggc
ccgcaggccatcgtcacgcgcaacgcatttgcgatgtgcgtcacgcaactgcttaaggcg
caggaccacggtcagttgacccctgctgcggaccagctcctggatgacctccgcggcgag
tctatccacgacaacaaggccaccaccgtcgaccccagcgtccaggagcgcctgcaacac
tacttcttcgagtgggtgcgcctgttcaccgagaaccccacgtctccagaggtctcgttt
gtgccttacatcacatggctgcagaatgacaacatcctcagtggcgaggacgtctccacg
gcgttctacacgtcggcgatcaaggctgccgtcgagtgcgacatgaagtcggagaacggc
cagtggttcggtactgactcgctggccaagctcatcatcctcatcgtcaagaactatggc
gacaagagcggccccggtagcgttactcgcaccgtctattacttcaataagattgtcacg
attatgtcgtacagccttgtgcgtgcacagctcaaccccgacgagcccttcgaccagcgc
ccgtgggcccgtttcttcacgagcatgctcgcggagattgcgtcgatcgaggcttcgctg
cccgagacggctctcggctgcctcaagagcattgccaacgtgctcggcatcgttcagccc
acatacgcgccgcgcttcgcgttcggttggttctcgatcgtctcgcaccgcctgttcatg
gccaagctcctcgtcgcaccccgccaggagggctgggccgactaccaccgcacgctcatg
tggctcctgcgcttcatgtcgccgttcatcactgccgacgccgacgacaacaacaacaac
atgggcctggcagcgcgcagcctctacaaggcgacactgcgcatcctgctggtgctcatg
cacgacttcccgggcttccttgtcgagtgctaccacactctctcgacggccattccagcc
cactgcgtccagctccggaacatcatcctcgcggcgttccccgccgccgaggcgccgctg
ccggacgtgtacaagcgtctcgaagagctcgttccggagatgcaaacgttcccgcgcgtc
cgctctgaccacgtgagtgcgctcaactcgggcaacgtcaagaacgccatcgacagcttc
gtgcacaacacgtcgccgaacggcgcactcatcgtgtccgagctcaagaaccgaatcgcg
gtgcagaaggtgctcccagacaacgcgaccacgacggtgtggaaccacactctgctccac
gcaaccgtcttctacctcggcacctcggcggtccaccggcactacatgcacacgggtgtc
gccgactttgaccacaaggaccccgccgtctcgctgcttctgggtctcgcgcactcgttc
gacgccgagggccagtacctcatcctctcggtgattgcggaccagctccgcttcccgtcg
gcccacacctcgttcttcgcgcagctcatgctctacatgttcaaggtgtcgacagacccg
ctcattgcgatgcgcatcgcacgcgtgctcttggagcgcgtcatcgtcgcgcgcccgcac
ccttggggcctcatcgtcacatttgtcgagctgctcgagaacccggcctatggcttctgg
gaccagcagtttgtgcgcgccgacgacgaaatcttcctcatgttccgtcgcgctcgcgag
ggctttggggcgcagccgctttaa
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integrated database retrieval system
