Cervus canadensis (wapiti): 122421654
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Entry
122421654 CDS
T07554
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122421654 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccad03019
]
122421654 (CNOT1)
Messenger RNA biogenesis [BR:
ccad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122421654 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122421654 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122421654
NCBI-ProteinID:
XP_043293770
LinkDB
All DBs
Position
18:39280735..39363468
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSTDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtca
ctgattacgaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagcactgat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaggaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctgtcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacagaatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgattttatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttaggaatgatggctcgaact
cattcaggattaacagacggaattccattacagagtatctctgctcctggcagtggaatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaatgtagaagtc
ttgatcgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctgggtttcaaattcgtgacagtaaaggacttcataatgtagtctatggc
attcagaggggtctgggtatggaagtgttccccgtagatctcatatacagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
ttcgccgactatccctgtcatactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgattgagtctctgctccggctc
gcagaggtggggcagtacgagcaggtcaagcagctcttcagcttccccatcaagcactgt
ccggacatgctggtgctggccctgctgcagatcaacacctcctggcacaccttgcgccac
gagctcatctccactctgatgcccattttcctggggaaccaccccaactcggctatcatc
ttgcactacgcgtggcacgggcagggacagtctccctcaatccgccaacttatcatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggctttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcccgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcttgtatgactttttta
aagagacggtgtccttctattttgggtggactcgccccagagaaagatcagcccaaaagt
gctcaacttcctccagaaaccctggcaacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtggccaattgcagtaacgtt
atgaacaaggccaggcaaccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagacgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtaccccacagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagctcccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
agcgatccttttgtacagaggaagctgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagattctacc
ataaagagggaacgagaagtatttaactgtatgctaaggaacttgttcgaagaatatcgg
ttcttcccccaataccctgataaagagttacatataacagcctgcctgtttgggggaata
atcgaaaaaggactggtcacttacatggcgctaggtttggccctgcgatacgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttcgatcagtcac
tttatgcaatttccacatcatttacaggagtatattgagtatggacagcaatctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaagcc
caggcccaggcccaggttccagcaaaagctccccttgctggccaggttagcactatggta
accacctcaacaaccaccactgttgcgaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctattaatacaacaaatatagatacattgcttgtg
gccacagatcaaactgagagaatcgtagagcccccagaaaatatccaggagaaaattgct
tttatcttcaacaacctttcccagtcaaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagagtttatgccttgggtttcacaatacctggttatgaagagagtcagt
attgagccaaactttcacagcctgtattcaaacttccttgacacgctgaagaatcctgaa
tttaataagatggttctgaatgagacctatagaaacatcaaagtactcctgacctctgat
aaagctgcagccaatttctccgatcggtctttgctgaagaacttgggacattggctagga
atgattacactagctaaaaataaacccatcttacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagagttgctctatgtagtgccctttgttgcc
aaagtcttagaatctagcattcgtagtgtggtttttaggccacccaacccctggacaatg
gcgattatgaatgtattagctgagctacatcaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtcctctgtaagaatcttgcattagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctgaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaggagctccctcctatcacaaccacaacaacttctacaaca
ccagccaccagcaccacctgcacagccaccgtcccgcctcagccacagtacagctaccat
gacatcaatgtctactccctcgcaggcctggcgccgcacattacgctaaacccaacgatt
cccttgtttcaggcccatccacagctgaagcagtgtgtgcgccaagcaattgaacgggcc
gtccaggagctggtccatcctgtggtggaccgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgcggaacttgacagctggaatggccatgattacttgcagggaacct
ttactcatgagcatatcaaccaacctgaaaaacagttttgcctcagcccttcgtactgca
agcccacaacaaagggaaatgatggatcaggcagctgctcaattagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgaaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgcccgagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgcaatgtgcct
ggcttcttgcctacaaatgatttaagtcagcccacaggatttttagcccagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
cagcatcttcatgctatcccgccaactttggccatgaacccccaagctcaggccctcaga
agtcttctggaggttgtagtattatcacggaactctcgagatgccattgctgctcttgga
ttgctccagaaggctgtagagggcttactggatgccaccagtggtgctgacgctgacctc
ctccttcgctacagagagtgccacctcttggtcttgaaagctcttcaagatggccgggca
tatgggtctccatggtgtaacaaacagatcacaaggtgcctaattgagtgtcgggatgaa
tacaaatataacgtggaggcagtggagttgctaatccgcaatcatctggtcaacatgcag
cagtatgatcttcacctggcccagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaatactgctggtggatgaaaggagcgttgcccatgttact
gaggcagatctgttccacaccattgaaaccctcatgaggattaatgctcactccagaggc
aatgctcctgaaggattgccccaactgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggtcgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaagactgatgac
ctcataacaaggttcttccgtctgtgtactgaaatgtgtgttgagatcagttaccgagct
caggcagagcagcagcacaaccctgctgccaaccccaccatgatccgagccaagtgctac
cacaacctggatgcctttgtccgcctcattgcactgctagtaaagcactcaggggaggcc
accaacacggtcacaaagatcaacctgctgaacaaggtcctcggtatagtagtgggagtt
ctcctacaggatcatgatgttcggcaaagtgaatttcagcaacttccctaccatcgaatt
tttatcatgctgctcttggaactcaatgcacctgagcatgtgttggaaaccattaatttc
cagacacttacagctttctgcaacacattccacatcttgaggcctaccaaagctcctggc
tttgtgtatgcttggcttgaactgatctcccatcggatatttattgcaagaatgctggca
cacacgccccagcagaagggatggcctatgtatgcacagttactgattgatttattcaaa
tatttagcgcctttccttagaaatgtggaactcaccaaacctatgcaaatcctctacaag
ggcactttaagggtgctgctggttcttttgcatgattttcccgagttcctttgtgattac
cattatggattctgtgacgtgatcccacctaattgtatccagctaagaaatctgatcctg
agtgccttcccaagaaacatgaggctcccagacccattcactcctaatctgaaggtggat
atgttgagtgaaattaacattgctccccggattctcaccaattttactggagtgatgcca
cctcaattcaaaaaggatctggattcctatcttaaaactcgatcacccgtcactttcctg
tctgatctgcgcagcaacctacaggtatccaatgagcctggtaatcgctacaacctccag
ctcattaatgcactggtgctctatgtagggactcaggccattgcacacatccacaacaag
ggcagcacaccttcgatgagcaccatcacgcactcggctcacatggacatcttccagaac
ctggctgtggatttggacactgaaggtcggtatctcttcttgaatgcaattgcaaatcag
ctgcggtacccaaatagccacactcactacttcagctgtaccatgctgtacctttttgca
gaggccaacactgaagctattcaagaacagatcacaagggttcttttggaacggttgatt
gtaaataggccacatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaaattctggaaccatgaatttgtacactgtgccccagaaattgaaaagttattc
cagtccgtcgcacagtgctgcatgggacaaaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
