Cyanistes caeruleus (blue tit): 111934526
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Entry
111934526 CDS
T05602
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111934526 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111934526 (CNOT1)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111934526 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111934526 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111934526
NCBI-ProteinID:
XP_023790418
LinkDB
All DBs
Position
11
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPNLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaattaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaattttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaagaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgtggaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagacggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgacggcaaagataagagtgacggaagccaggcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctaacctggacttcaaagtagtaacgtatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcacattgtagtttttggc
atccagagagggctgggcatggaggtttttccagtaaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttattgcagatcaacacgtcctggcataccttgcgccat
gaactcatctccacactcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatccttggtggccttgctccagagaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcgacagcccccacctggagtcatgcccaaaggacgcccgcccagcgca
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattcccacctctttccacccaa
aaccagacaaccggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaggaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctacagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcatc
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccaccgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaactgaaggaa
actgtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcacagcttatattccaacttcctcgacacacttaaaaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagccaacttctcggaccgttccttgttaaagaaccttggtcactggctggga
atgataacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcactc
ctactggaagcttatgttaagggacaacaggagttgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctgcatcaggaacacgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacattaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagttgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacatgtacagccacagttcctccacagccccagtacagttatcat
gacatcaacgtctattctttaggagggctggctccacacattaccttaaatccaacgatt
ccactgttccaagcccacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgcgcg
gtgcaagaccttgtccacccggtggttgacagatccatcaagattgccatgacgacctgt
gagcagatagtcaggaaggacttcgccctggattcagaggagtcacggatgcgtgtggct
gctcaccacatgatgcggaacctgactgccgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttggcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaagcatgctaggcaagaggggcgtcgctac
tgcgatcctgttgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactg
gagcagcacctgcagtccattccacacaccctggccatgaatcctcaagtccaagcgttg
cgaagcctcttggaggcggtggtagtggctcggaactcccgggatgctattgctgcactt
ggactactgcagaaggctgtagagggcttgctggatgccaccagtggggctgacgctgac
ctcctgctccgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggacggtcgt
gcctatggatctccgtggtgtaacaaacaaatcactaggtgcctgattgaatgcagagat
gagtacaaatacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtatgaccttcacttggctcagtctatggagaatggcttgaactacatggctgtg
gcatttgccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgta
acagaagcagatctgtttcacactattgagacactcatgagaattaatgctcattccaga
ggaaacgccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagct
tctgagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgttt
gttggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttc
cgtctttgcactgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcac
aatcctgcagccaaccccacaatgattcgagccaagtgctaccacaacctggatgccttt
gtgcgactcattgcactgctggtgaagcactctggggaggcaaccaacacggtcacaaag
atcaacctcctgaataaggttctgggtattgtggtgggagttcttctgcaagaccatgat
gttcggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttg
gaattgaatgctcctgagcatgtgctggagaccatcaacttccaaacactcacagctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttattgattgatctgttcaagtacttggctcctttcctt
agaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgat
gtgatcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaac
atgaggcttccagatcctttcacccccaacctaaaggtggacatgttaagtgagattaat
attgctccacgaatactcacaaatttcactggggtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgaagcaac
ctacaagtatcaaatgaacctggcaaccgatacaacatccagctgatcaatgcactggtg
ctctatgtaggtactcaagctattgcacacattcataacaaaggcagcacaccctccatg
agcaccattacccactcagcccacatggacatcttccagaatttggcagtagacctggat
actgaaggccggtacctcttcctgaacgccatcgccaaccagctgcggtaccccaacagt
cacacccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggcc
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctccttattacgtttattgagctgataaaaaatccagcctttaagttctggaac
catgagtttgttcactgcgctccagaaattgagaagttgttccagtcagttgcacagtgc
tgcatggggcagaagcaggcccagcaagttatggaagggactggtgccagttag
DBGET
integrated database retrieval system
