Clavibacter californiensis: FGD68_00390
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Entry
FGD68_00390 CDS
T08592
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FGD68_00390 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaf03021
]
FGD68_00390 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_00390 (rpoB)
Enzymes [BR:
ccaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FGD68_00390 (rpoB)
Transcription machinery [BR:
ccaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FGD68_00390 (rpoB)
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FGD68_00390 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UKF80154
LinkDB
All DBs
Position
complement(70875..74363)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAAARNATPTPQNGRDASRLSFAKITDTLTVPDLLALQTESFDWLVGSDAWKRRVEEGTA
QGRTDLALNSGLEEIFEEISPIEDLGETMQLGFTNPYLEEQKYSIDECKERGKTYSAPLY
VEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEKT
SDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEQILEEFKG
VASIELTLEKDSILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRY
KINRKLGIDKQLTDSVLTVEDILATIKYLVSLHANETKMNGTRDGKAVELRLDVDDIDHF
GNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGT
SQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASFARINSFGFIETPYRRVVDGVVTDTIDYLTASEEDEFLVAQANAPLTKDFR
FAEDRVLVRPKGGEVELVAKENVHYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQR
QAVPLLRSESPLVGTGMEGYAAVDAGDVLTADASGVVQEVSAEVVTIQLDEGGTQTYYLR
KFDRSNQGTSYNHRVLVSAGDRIEAGEVIADGPATENGELALGKNLLVAFMPWEGHNFED
AIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRIG
AEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKVF
DSQDGDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTP
VDVILNPLGIPGRMNFGQVLETHLGWIAKQGWEVEGKPKWAERLPDHARQAPAGTKVATP
VFDGALEEEIAGLLDSTTVTRDGDRLIGSSGKTRLFDGRSGEPFPEPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQAVSLRDTDDEVF
RAAEELGINISTRFESSSIDDI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaactcccactccccagaacggtcgcgacgcatcgcggctc
tcgttcgcgaagatcactgacaccctcaccgtccccgacctcctcgccctgcagaccgag
agcttcgactggctcgtcggctcggacgcgtggaagcggcgcgtcgaggagggcaccgcg
cagggtcgcaccgacctggcgctcaactcgggcctcgaggagatcttcgaggagatctcc
cccatcgaggacctgggcgagaccatgcagctcgggttcacgaacccgtacctcgaggag
cagaagtactccatcgacgagtgcaaggagcgcggcaagacctactccgctcccctctac
gtcgaggccgagttcatgaaccacctcacgggtgagatcaagacccagacggtcttcatg
ggcgacttccccctcatgacggagaagggcacgttcatcatcaacggcaccgagcgtgtc
gtcgtgtcccagctcgtccgctcgcccggcgtgtacttcgagcgccagcaggagaagacc
tccgacaaggacatctactccgcccgcgtcatcccctcccgtggcgcctggctcgagttc
gagatcgacaagcgcgaccaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcggtc
accgtgttcctcaaggccctcggcctcaccagcgagcagatcctcgaggagttcaagggc
gtcgcgtccatcgagctcacgctcgagaaggactccatcctcaccaaggaggaggccctc
aaggacatctaccgcaagctccgtccgggcgagcaggtcgccgccgaggccgcccgcgcg
ctgctggacaacttctacttcaaccccaagcgctacgacctggcgaaggtgggtcgctac
aagatcaaccgcaagctcggcatcgacaagcagctcaccgactcggtgctcacggtcgag
gacatcctcgcgaccatcaagtacctcgtctcgctgcacgcgaacgagacgaagatgaac
ggcacgcgcgacggcaaggccgtcgagctgcgcctcgacgtggacgacatcgaccacttc
ggcaaccgccgcatccgcgcggtcggcgagctcatccagaaccaggtgcgcaccggcctg
tcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggccatcacg
ccccagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcggcacg
agccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctcacccacaagcgc
cgcctctcggcgctcggcccgggtggtctgtcccgtgagcgcgccggcgtcgaggtccgc
gacgtccacccgtcgcactacggccgcatgtgccccatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctggcgtcgttcgcccgcatcaactcgttcggcttcatcgag
accccgtaccgtcgcgtcgtcgacggcgtggtcacggacacgatcgactacctcacggcc
agcgaggaggacgagttcctcgtcgcccaggccaacgcgcccctcacgaaggacttccgc
ttcgcggaggaccgcgtcctcgtccgcccgaagggcggtgaggtcgagctcgtcgcgaag
gagaacgtccactacatggacgtctccccgcgccagatggtgtcggtcgcgacctcgctc
atccccttcctcgagcacgacgacgcgaaccgggccctcatgggcgcgaacatgcagcgt
caggccgtcccgctgctgcgcagcgagagcccgctcgtcggcaccggcatggagggctac
gcggcggtcgacgccggcgacgtcctcacggccgacgcctcgggcgtcgtgcaggaggtg
tcggccgaggtcgtcaccatccagctcgacgagggcggcacgcagacctactacctgcgc
aagttcgaccgctcgaaccagggcacgagctacaaccaccgcgtcctggtctcggccggc
gaccgcatcgaggccggcgaggtcatcgccgacggccccgccacggagaacggcgagctc
gcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggccacaacttcgaggac
gcgatcatcctgagccagaacctggtcaaggacgacaccctctcctccatccacatcgag
gagtacgaggtcgacgcgcgcgacaccaagctcggcaaggaggagatcacccgcgacctc
cccaacgtcagcccggagctgctcgccgacctcgacgagcgcggcatcatccgcatcggc
gccgaggtccgccccggcgacatcctcgtgggcaaggtcacgccgaagggcgagaccgag
ctcagcgccgaggagcgcctgctgcgcgcgatcttcaacgagaagagccgcgaggtccgc
gacacgtccctgaaggtgccccacggcgagcagggcacgatcatcggcgtcaaggtcttc
gactcgcaggacggcgacgacgagctcggctccggcgtcaaccagcgggtcgtggtgttc
atcgcccagaagcgcaagatcaccgagggcgacaagctcgccggccgtcacggcaacaag
ggcgtcatctccaagatcctgccggtcgaggacatgccgttcctcgccgacgggaccccg
gtcgacgtcatcctcaacccgctcggcatccccggccgcatgaacttcggccaggtcctg
gagacccacctcgggtggatcgccaagcagggctgggaggtcgagggcaagccgaagtgg
gccgagcgcctgccggaccacgcgcgccaggccccggccggcacgaaggtcgccaccccg
gtgttcgacggagcgctcgaggaggagatcgccggcctgctcgactcgacgacggtcacc
cgcgacggcgaccgcctcatcgggtccagcggcaagacgcgcctgttcgacggccgctcc
ggcgagccgttccccgagcccgtctcggtcggctacatgtacatcctgaagctgcaccac
ctggtggacgacaagatccacgcgcgctcgacgggtccctactcgatgatcacgcagcag
cccctgggcggtaaggcccagttcggcggccagcggttcggcgagatggaggtctgggcg
ctcgaggcctacggcgccgcgtacgcgctgcaggagctcctcaccatcaagtcggacgac
atcctcggccgcgtcaaggtgtacgaggccatcgtcaagggcgagaacatccaggaaccg
ggtatccccgagtccttcaaggtcctgatcaaggagatgcagtccctctgcctgaacgtc
gaggtcctctcggccgacggccaggcggtcagcctgcgcgacacggatgacgaggtcttc
cgcgcggcggaggagctcggcatcaacatctccacccgcttcgagtcgtccagcatcgac
gacatctaa
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integrated database retrieval system
