Crenobacter cavernae: DWG20_04785
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Entry
DWG20_04785 CDS
T09767
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ccah
Crenobacter cavernae
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccah03016
]
DWG20_04785
Enzymes [BR:
ccah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DWG20_04785
Transfer RNA biogenesis [BR:
ccah03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DWG20_04785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AXK38802
UniProt:
A0A345Y4F0
LinkDB
All DBs
Position
complement(981713..983638)
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AA seq
641 aa
AA seq
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MNVFYEESGSFKVGSVVSKNDASLQVDTQHGKRAKIKVANVLVEFTSALNDFLPAAEALA
ADIDIDFLWEVAGDDEFDYQTLGADYFGHAPTAIEAAALMMRIYGAPMYFYKKGKGRFKA
APEDALKAALAGIEKKKREQAQIDEWVAAMLAGDLPDAIRVKLMELLHRPDKNTIEFKAF
DAAARAASVAPLRLAERLGGIPSVPAYLMAGFLMEHFPRGAGFPALPVPEWPADLARAEV
AAFSIDDAATTEIDDALSVTELPNGNKRVGIHIAAPTLGIAADSSIEKLVLNRLSTVYFP
GDKITMLPDELVQAFTLEAGRDCPAVSLYVEVDADLNPVSFENRVELVPIAANLRHDALE
AVFNEQTLAEPGFGPDYAFKTELVWLWQFAVALEKRRGKYDPTRPVQQDYNFAVVDGKVV
ISTRRRGAPMDKLVSELMILANSEWGRMLAEADIPALYRAQTAGKVRMTTRAEPHVGLGV
AQYAWSTSPLRRASDFVNQRQLTAMIRNEQPQFEQGSANLFGILRDFDAAYSAYLGFQDK
MEHFWCLRWFGQEGVTEPTATYIKEDLVRLDGLPMRLRLPGLPELASGDKIRLGIVRIDE
LAGEIELRFLGKVGHEDQVPQDEQDDEAAGEAVGAPSHSGH
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcttttacgaagagagcggcagtttcaaggtgggcagcgtggtgtcgaagaac
gacgccagcctgcaggtcgatacccagcacggcaagcgcgccaagatcaaggtggccaac
gtgctggtcgaattcacgagcgcgctgaacgacttcctgccggcggccgaggcgctcgcc
gccgacatcgacatcgacttcctgtgggaagtggcgggcgacgatgagttcgactaccag
acgctcggcgccgattacttcggccacgcgccgaccgcgatcgaggcggcggcgctgatg
atgcgcatctacggcgcgccgatgtacttctacaagaagggcaagggccgcttcaaggcg
gcgccggaagacgcgctgaaggccgcgctggccggcatcgagaagaagaagcgcgagcag
gcgcagatcgacgaatgggtcgcggcgatgctggccggcgacctgcccgacgcgatccgc
gtcaaattgatggaactgttgcaccgcccggacaagaacacgatcgaattcaaggccttc
gacgccgccgcgcgcgcggccagcgtcgcgcccttgaggttggccgagcgtctgggcggc
atcccgtcggtgcccgcctacctgatggccggcttcctgatggagcacttcccgcgtggc
gccggcttccccgcgctgccagtgcccgaatggccggcggacctcgcgcgcgccgaggtc
gcggcgttctcgatcgacgacgcggcgaccaccgagatcgacgacgcgctgtcggtgacc
gagctgcctaacggcaacaaacgcgtcggcatccacatcgccgcgccgacgctcggcatc
gcggcggacagctcgatcgagaagctggtgctcaaccggctgtcgaccgtctacttcccc
ggcgacaagatcaccatgctgccggacgagctggtgcaggcgttcacgctggaggccggc
cgcgactgcccggcggtcagcctctacgtcgaggtcgacgccgacctcaaccccgtttct
ttcgagaatcgcgtcgaactcgtgccgatcgccgccaacctgcgccacgacgcgctcgag
gcggtgttcaacgagcagacgttggccgagcccggcttcggtccggactacgctttcaag
actgaactcgtctggctgtggcaatttgccgttgcgctcgagaaacgccgcggcaagtac
gacccgacccgtccggttcagcaggactacaacttcgccgtcgtcgacggcaaggtggtc
atctccacccgccgccgcggcgcgccgatggacaagctggtgtccgagctgatgatcctc
gccaacagcgagtggggccgcatgctggccgaggccgacatcccggcgctgtaccgcgcg
cagaccgccggcaaggtcaggatgacgacccgcgccgagccgcacgtcggcctcggcgtc
gcacagtacgcgtggagcacctcgcccttgcgccgcgccagcgatttcgtcaaccagcgc
cagctgaccgcgatgatccggaacgagcagccgcaattcgagcagggcagcgcgaacctg
ttcggcatcctgcgcgacttcgatgccgcgtacagcgcctacctgggcttccaggacaag
atggagcacttctggtgcctgcgctggttcggccaggagggcgtcaccgagccgaccgcg
acctatatcaaggaagacctggtgcgcctcgacggcctgccgatgcgcctcaggctgccc
ggcctgcccgagctggcgtcgggcgacaagatccgcctcggcatcgtgcgcatcgacgag
ctggccggcgagatcgagctcaggttcctgggcaaggtcggccacgaggaccaggtgccg
caggacgagcaggacgacgaggccgccggcgaggcggtcggtgcgccgtcgcacagcggc
cactga
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