Cajanus cajan (pigeon pea): 109800779
Help
Entry
109800779 CDS
T04868
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03022
Basal transcription factors
ccaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109800779
09124 Replication and repair
03420 Nucleotide excision repair
109800779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109800779
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109800779
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109800779
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109800779
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109800779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
109800779
NCBI-ProteinID:
XP_020217240
LinkDB
All DBs
Position
6:5794064..5801623
Genome browser
AA seq
768 aa
AA seq
DB search
MGYGEKGGRPFKKLKASSKFQEDPRKGFVDDDDVYGGDDAYDDDEGKTKDFSKLELKQDH
TNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ETETVISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFVESPFPEVLKTLLRD
DAISRARIVSESANGDGFTISKAAGEIEGTHDELLNEAEVAAVAEEKEAHSFEIDPSQVE
NVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSG
IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDS
KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI
SITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT
KEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAM
KLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSR
RQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSF
KVITSLPPPDEGSRLSYYHIEDQLALLGKVLSAGDDAVGLEQLEEDADEIALHNARRSQG
SMSAMSGAKGMVYMEYSTGRHKGQGQLKSKPKDPAKRHFLFKRRYGAT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggatacggtgaaaaaggaggacgacccttcaaaaagctcaaggcctcatctaaattc
caggaagatcctcgaaaaggattcgtcgacgacgacgatgtatatggcggcgacgatgca
tacgacgatgacgaagggaaaactaaggattttagtaaattagagctgaaacaggatcac
accaatcgccctctgtgggcttgtggcaatggccgcatattcctcgagactttctcacct
ttgtacaagcaagcttatgattttcttatcgccatcgccgagcctgtttgcaggcccgag
tcgatgcacgaatacaaccttactccgcactcgctgtatgcggctgtttcggttggtcta
gagacagaaacagtcattagtgttttgaacaagttgtccaagaccaagcttccgaaagag
atgattaaatttatacatgattctactgccaattatggcaaagtgaaactcgtgctcaag
aaaaatcgctactttgttgaatctccatttccagaggtactgaagacattgctcagggat
gatgctatatctcgagcaaggattgtttctgagagtgcaaatggagatggatttaccatc
agcaaagcagctggtgaaattgagggcactcatgatgagttgctaaatgaagcagaagtg
gcagcagttgcagaggagaaagaagcccattcatttgaaattgatccttctcaggttgaa
aatgtaaagcaacgttgcttgccaaatgcattaaattatcccatgttggaggagtatgac
ttcagaaatgataccgtgaacccagatcttgacatggaactaaagcctcaagcacaacca
cggccatatcaagagaagagccttagtaaaatgtttggaaatggtagagcaagatctggt
ataatagttctaccttgtggtgctggaaagtctctagttggtgtttctgctgcttgccgg
ataaaaaaaagctgcctctgtttggcaacaaatgctgtttctgtagatcagtgggctttt
caatttaaactatggtcaactatccgagaagaacaaatatgtcgtttcacatctgatagc
aaagagagattccgtggtaacgctggagttgttgtgacaacatataatatggttgctttt
ggtggtaaacggtctgaagaatctgaaaagatcattgaagaaataagaaacagagaatgg
ggattgctcctcatggatgaggtgcacgttgttccagcccatatgtttcgaaaagtcatt
agtatcactaaatctcactgtaaacttgggctcacagctacacttgtcagagaggacgaa
aggattacagatctgaactttctgattggtcccaagctgtatgaggcaaattggttggat
cttgtaaaaggtggttttattgcaaatgtacagtgtgctgaagtatggtgtccaatgaca
aaagagttttttgctgagtatttgaagaaagagaactccaagaagaggcaggcactttat
gtgatgaatcctaataagttcagagcatgtgagtttctcataaattatcatgaaagggca
cgtggtgataaaattatagtctttgctgataatctgtttgctctcaccgagtatgcaatg
aaactgcgcaaaccaatgatatatggtgctacaagccatgttgagaggacaaaaatttta
caagcgttcaaaactagcaaagatgtaaatactatatttctttctaaggtgggtgataac
tcaattgatattcctgaagcaaatgtgataattcagatctcttcgcatgctggttcaagg
cgacaagaagcccagcgtctgggtcgtattcttagggcaaagggaaagcttcaggataga
atggcagggggcaaggaggagtataatgcatttttttattcccttgtgtcaactgatacc
caggagatgtattactcgactaagaggcagcaatttttaattgatcagggttacagcttt
aaggtaattacaagcttgcctcctcctgatgaaggatctcgtttgagctattatcacatt
gaggatcaattggcacttcttggaaaggtgttgagtgctggtgacgatgcagttggatta
gagcaactagaagaagatgcagatgaaatagctcttcataatgcccgtcgatctcaagga
tccatgagtgcaatgtccggcgcaaaaggaatggtttatatggagtacagtactgggcgt
cacaaaggccaaggacagctgaagagcaagccgaaagatccagcaaagagacacttctta
tttaaaagacgatatggcgcaacctaa
DBGET
integrated database retrieval system
