Cajanus cajan (pigeon pea): 109812995
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Entry
109812995 CDS
T04868
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109812995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109812995
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109812995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
zf-4CXXC_R1
Motif
Other DBs
NCBI-GeneID:
109812995
NCBI-ProteinID:
XP_020232677
LinkDB
All DBs
Position
Unknown
AA seq
1401 aa
AA seq
DB search
MGSSFPKQRNAYLLESHTQKVTSEKTPHNPSDTTGPYTLWRLRSPFALTSLDAWGASALA
SRVANLSFTKLPTRYHPHLEANNLRTSGGSPISLERSSPIQSQGVPVACRTRSKRRVVGS
GLRMRVKRRKVDGRVVDLICLDDEEGPSEKIELGCGALSSSGDLLEEGFEYLGESDDDPE
EVIVVGDSDVGSDEEKGLRHCEKMFEGKEEKECKEEKVNFEDDEYGGRREKPVVMTRNSE
SEGESCGSDESDSEDGETSDEDFRVDDDGVEIECSSSEESDSSCGDDDDEDEDDEDDSDD
NDNDDDDERGEYNKIVKERVSKVESGSESVGIETKSDTNQMQNNSSEKMVKERVRNVESA
TEGSGVWRRRKVERKDNEQVDEEEEREEWIGPDCASATSCKSAFAKEERLKAEEKHEAKR
VESVSADAEVFVDHFQNSSSSTPSENEALNTSHQSVSLQKETGDSAVAKKSEKNDNVHAN
ASVSVDIEEHDSEPEREIDMLWDEMDRMLRDGETEIGDPPVVKKRNKNNNANPNANVHDC
LNLDEHEGKGHNHARRKGVRNLSSFQKIQDKIGYSAEYVIKEDKGRAHKEWFNSHNREKL
RVVDDDETRDRYHEILRMPSRTKDQGFKFFTECFWGKHDTVKNDSIEFEENDHDVGQSQT
PPLVCRGEIPLNWDFMKEEPIEKTESEKELDMLWGEMDMLLRAEEIGLQVGNIGTNEASE
NPASHCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVDSERSGRKGSNGGANTPQFDGD
LFNGSGNDSKAVWSHGTVWDLIPDIRQSLYPHQQEGFEFIWKNLDGSIDLAKIKRVGPPC
EGGCIISHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELRKWNIGIPFH
NLNNADLSGKEYAINKIDWSGNQQHNKDTIRMMKLCSWYKEKSILLISYNLYEKLAGGKS
EADGEKDKKNRKMKKEKSAGTREHIEKNALGEVLRDKPGLLILDEGHTPRNHRSCIWKVL
SESRTQKRILLSGTPFQNNFMELYNILCLMKPSFPDSIPQELKKFCQSRLMHDRQASKDV
NWEPATSGNPADEKINQLKMLMTPFVNVHKGSILQKNLPGLRDCVLVLQPDGFQQQMLES
IECSQNGLNFEHKLALVSVHPSLFLNCSLSEKEEAVIDKDRLEKLRPKPYGGVKTKFLME
FVKLCDAVDEKVLVFSQFIDTLCLIKEHLESTFNWSVGTEVLYMYGKVDQKQKQSLIHSF
NDANSQAKVLLASIKACSEGINLTGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTY
HLLAQDTPEFTKYCKQAQKDRLSELVFSNKNAESDKVKSCGVEFEDKVLDIMLQHKNLKD
MFAECLLQPKDRDLETGPLML
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgtcgtttcccaaacagcgaaacgcgtacctcctcgaaagccacactcaaaag
gtgacatctgaaaagacaccacacaacccaagcgacacgacgggtccgtacaccctctgg
aggcttagaagccccttcgctcttacatcactcgatgcttggggggcaagtgcactagcc
agccgagttgccaacttgtccttcaccaagctgcctactcggtaccacccccatcttgaa
gcgaacaacctgcgaaccagtggaggctcaccaatctcattggagagatcgtcaccgatc
caatctcagggtgttcctgttgcctgcaggacccgtagcaagagaagggtagttgggagt
ggtttgagaatgagagtgaagaggagaaaggtggatggacgtgttgttgatttgatttgt
ttggatgatgaagagggtccaagtgagaaaattgaattggggtgtggcgctttatcttca
tccggtgatttactcgaggagggttttgagtatttgggagagagtgatgatgatcctgaa
gaggtgattgttgttggtgacagtgatgttgggagtgatgaggaaaaggggttgaggcat
tgtgagaagatgtttgagggtaaagaagaaaaggagtgtaaagaggaaaaggttaacttt
gaggatgatgagtacggtggtagacgtgaaaaaccggttgtaatgacgcgaaatagtgag
agtgagggtgaaagttgtggttcagatgaaagtgatagtgaggatggggaaaccagtgat
gaggattttcgggttgatgatgatggggtggagattgaatgctcgagcagtgaggagagt
gattcttcttgtggtgatgatgatgatgaagatgaggatgatgaggatgatagtgatgat
aatgataatgatgatgatgatgagaggggggaatacaacaagatagtgaaggagagggtg
agtaaggtggaaagtggatctgaaagtgttgggatagaaacaaaatctgacacaaatcaa
atgcaaaataactcatcagaaaagatggtgaaggagagggtgagaaacgtggagagtgca
actgaaggcagtggagtttggagaagaagaaaagttgaaaggaaagataatgagcaggta
gatgaggaggaagagcgagaggaatggattggtcctgattgtgctagtgcgacctcttgt
aaatctgcgtttgctaaggaggagagactgaaagcagaagagaagcatgaagcaaagaga
gttgaaagtgtcagtgctgatgctgaagtctttgttgatcactttcaaaattctagtagt
tcaacgccttccgagaatgaagcactaaatacaagtcaccaaagtgtgtcactgcagaaa
gagaccggagattcagctgtggccaagaagagtgagaagaatgataatgtccatgccaat
gctagtgtctctgtcgatattgaagaacatgattcggagcctgaaagggagattgatatg
ttgtgggacgaaatggataggatgcttcgagatggagaaactgagataggagatccacct
gtggtcaagaagagaaataaaaataataatgccaatcccaatgccaatgtacatgactgc
ttgaatcttgatgaacatgaaggaaaagggcataatcatgccagaagaaaaggtgtgaga
aatttatcatcttttcaaaaaatccaagataagataggatattcagctgaatatgtaatc
aaggaggacaagggaagggcgcacaaagaatggtttaatagtcataatcgtgagaagtta
agagtggtggatgatgacgaaactagagacagatatcatgaaatcctaaggatgccatca
agaacaaaggaccaaggttttaaattctttactgaatgcttttggggcaagcatgatact
gttaaaaatgattcaatcgagttcgaagaaaatgatcatgatgttggtcagagtcaaact
cccccattagtttgtcggggtgaaattcccttgaattgggactttatgaaagaagaacct
attgaaaaaacagagtctgagaaggaactagatatgttgtggggtgaaatggatatgttg
cttcgagcagaagaaattgggttacaggttggtaatatagggacaaatgaagcaagcgaa
aatccagcctcccattgcaagcatgacactatttttaatgaggagattgggatatattgc
agatggtgtggttggatagctacggagatcaaatatattacgccaccatttgtggattct
gaaagatcaggtagaaaggggtcaaacggtggagcgaacaccccacaatttgatggggat
ctgtttaatggttctggaaatgactcaaaggcagtgtggtctcacggcacagtttgggac
cttattcctgatataagacaaagcttgtatcctcatcaacaagaagggtttgagttcatt
tggaaaaacttggatggaagcattgaccttgccaagataaagagggttggcccgccttgt
gaaggtggatgcattatttctcatgctcctggaacaggaaagacaaggttgaccatggtg
tttcttcagacatatttgcaagtgtttccaaagtgtctacctgttatcattgctcctgct
aacatattgcttacttgggaagatgagttgaggaagtggaacataggaattccattccat
aacctgaacaatgctgatttatcaggaaaagaatatgccataaataaaattgactggtct
ggcaatcaacagcataataaggataccatacgaatgatgaagttgtgttcatggtacaaa
gaaaagagcattctattaatcagctacaatttgtatgaaaagctagcagggggaaagtct
gaagctgatggtgaaaaagataagaaaaataggaagatgaaaaaagagaaaagtgcaggg
actagggagcacattgaaaaaaatgctttgggagaggttctgcgtgacaaacctggtttg
ctaattcttgatgaagggcacacaccaaggaatcatcgtagttgcatttggaaggttcta
tcagaaagtagaactcagaagcgaatccttctctctgggacacctttccagaacaatttt
atggaactttacaatattttgtgtttaatgaaaccatcctttcctgacagcataccccaa
gaactcaagaagttttgtcaaagtagactaatgcatgacagacaagcttcaaaagatgtg
aattgggaacccgctacttctggaaatccagctgatgagaaaataaaccagctaaaaatg
ctgatgactccctttgttaatgttcacaaaggtagcattcttcagaagaaccttcctggc
ttgagagattgtgtgctggttttgcagccagatggtttccagcaacaaatgttggagagc
attgaatgttctcaaaatggactgaactttgaacacaagttggccttggtctcagtccat
ccatcccttttcctcaactgctctctgtcagaaaaagaagaagctgtcattgacaaggat
cggttggaaaagcttaggccaaaaccttatggaggggtgaaaaccaagtttttgatggag
tttgtaaaactttgtgatgcagttgatgagaaagtccttgttttcagccaattcattgat
accttgtgcttaattaaggagcatcttgaatccacctttaattggtctgtgggcacggaa
gtgttgtatatgtatggcaaggttgaccaaaagcaaaaacagtccctcattcatagcttc
aatgatgcaaatagccaagcaaaggtgttgcttgcttctataaaagcatgttctgaaggc
attaacttaactggagcttcaagggttgtgcttgttgatgttgtttggaacccctcagtt
gaaaggcaagctatttgccgtgcatatagactagggcaaaagagggttgtttacacttac
catcttcttgcacaggacacccctgaattcaccaagtattgtaaacaagcacaaaaggac
cggttatctgaactggttttctcaaataaaaatgctgaaagtgataaggtcaagagttgt
ggagtagagtttgaggataaggttcttgatatcatgcttcagcataaaaatcttaaggac
atgtttgctgaatgtttgctacaaccaaaggacagagatttggaaactggccccctaatg
ctctga
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