Ceratina calcarata (carpenter bee): 108625734
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Entry
108625734 CDS
T06061
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108625734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108625734
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108625734
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108625734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
108625734
NCBI-ProteinID:
XP_017881455
UniProt:
A0AAJ7N800
LinkDB
All DBs
Position
Unknown
AA seq
2403 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSSIDFSTG
EPPESSAKDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLQPSPKFFLCLKKG
LSLTLVQEVAFAIALLHSENTEIRTLALEHVQKQLPELIKNYINSESSNRHQEEGLHDSL
PEVLHLILSQALHSANHFGLLPEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQTK
IELNMAVNQMDGNSLVELIMELGYGFTSSVEDCRSALAGLGAREISPACAARVLSHMARS
WNSLDDAGGLQSFWGNSGTAQDAKEKSNDSAAPTTWNVEVFVQALKEIQSTLSWNDVIVK
LDHADFIIKDRQGLNLLITGLRLGLQHQGYPPDIFPVELFYRHWDNVEGQFSLVQQVLKY
PDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFKW
PIQHCPDVLVLALLQINAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKSI
IMHAMADWYIRGDHDQTRLSRILDVAQDLKALTYLLTAQSYPFVIDLACLASRREYLKLE
KWLTDKIREQGEVFVAASVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQV
CAGSVSQECSEAIMTMVQNCSLMLSKNTMSRPPPPGVLRHRALEPFNPAALGGQLFSSKQ
VDPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSPGSPSRLMGPSPSPFPMLPLS
SQLHSGPVGTQGPSVLPGSTTIGGLGRLGPPTGIEKARIPETSNLFPDMTQNVSKEIEDE
ANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQYPD
KELQITAQLFGGIIEKGLINSYVTLGLALRFVLDALRKSEGSKMYYFGITALDRFKSRLK
DYQTYCEHVRAIQHFSEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTTYK
TITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITSPPEALQDKT
AFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLKLP
DIYKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILHIDIDLKS
LLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNL
KFEIEVLCKNLSIDVGELKPALYLKDPDKLRNLEYQLSHPNKKSESNNNQQQTQGPIEEL
VDPGTTGTIVPQNAPANTTPSLPIGPPEPRFNYMDISVTGIANISQHITINNNLPLFQAH
PHLKQLVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHMVR
NLTAGMAMITCRDQVLTSIGTHLKQALMQALMGTTTPQQKELIEQAANVVAADNMELACA
FVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGVTP
QQMSVYEEFARNIPGFLPLSERDTQALLMPKPVTEPTVTAFAANPAVAVATAQQVAAYAA
AVSNDEVGAMLEKLATEVEVLLATMGPAPQLGPTPQHAALHGLLESIILTRRSRDAGAAM
ALLKKAVEGLLDGPISSGVIDSEIMRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNAMATAFAMQLIQVYLIDERQTTH
VTESDLFHTIEILARIAHHRAPPEGISLYKLTSLMESLRANHDPGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLLEKTEYLLREWISMHHSPTHARDPTKAFGIFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRALTETNAAPSVVRAKCFHSLDAFVRLVALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKAPGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMKNLILSA
YPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASQIQPLSFKKELDSYLRARAPVTFLS
ELRSNLQVSQEAGSRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFVNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFVELIKNPTYKFWTHEFVHCAPEIEKLFESIARSCMVQKQQVQPTPEPE
IPE
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aataagaaaaattttcgggacagctgccaggaaatatcagttctggtgcagtggaagggt
ttggaggcagacagacatttgctgcgctctttactctcgagtatcgacttctcaacagga
gaaccgccagaatcaagtgcaaaagattactttcaagtgcaacttctcaaacaagagtgt
actaatcttcttagcaaaccatcttttatttctaatctgtgttttgctattgaccatcca
tttcatcaacaaaagaccttacaaccatcgccgaagttttttttatgtttaaaaaaggga
cttagcttaactctggtacaagaagttgcatttgcgattgccttgctgcactcagagaat
actgaaattcgtacattggccctagagcacgtacaaaagcagttgcctgaattgataaaa
aattatattaattctgagtcaagcaatagacatcaagaagagggattgcacgattcgttg
cccgaagtccttcaccttatattatctcaagcacttcattcagccaatcactttggcctt
ttgcccgaagcaaaggaaaaatttctcaagaatctaaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtacccagacaacggggaaactccgcaaaccaaa
attgagttaaacatggctgttaaccaaatggatggcaattctctagtagaattgattatg
gaattgggatatggatttactagcagtgttgaagattgccgatcagccttagctggccta
ggagctcgggaaatttctccagcatgtgccgcgagagttttatctcatatggcacgcagc
tggaacagtcttgacgatgctggaggactacaatcgttttggggtaattcaggaactgca
caggatgcgaaggaaaaatcgaacgatagtgctgctccaactacatggaacgtcgaagtt
tttgttcaagctttaaaagaaattcaatctacactatcctggaatgatgtgatagtcaag
ttggatcatgcagattttattattaaagacagacaaggattgaatctgctgattacagga
ttgagattgggtttgcaacatcaaggctacccgccggatatatttcccgtagaacttttt
taccgtcattgggacaacgtagaaggacagttttctttagtgcaacaagttctgaaatat
cctgatatattttgtttcgctgattacccatatcattctgtaaccgtcgatgtattaaaa
gcagcaccggaaagtgacagtaaagaggcacaaacttggagatcgttgaatgtagttgaa
ctacttttgcatatggctgaaagaggattgtacgggccagttcaagaaatcttcaaatgg
ccaattcagcactgccccgatgttcttgtattagcattattacaaattaatgctccaatc
actatacttagacaagaattacttagtacattaatgcctatcttcctcgggaatcatccg
aactctgctgttattctgcatcatgcatggcatgggaatacagttaaaatcaaatctatt
atcatgcatgctatggcagattggtatatacgaggagatcacgatcagacacgattatct
cgtattcttgatgttgctcaagatctgaaagcattaacgtatttgttaactgctcaatca
tacccatttgttattgatttggcttgtttggcatcgagaagagaatatttaaaactagaa
aaatggttaaccgataagatcagagagcaaggagaggttttcgttgctgcttctgtaaaa
tttttacaaagacgttgcccccaagtgatgggacctggaataaaggaggatcttacagtg
ccgaaggcgagtcaacttccacaagaaacattgacaacaatgcttgcttgtctacaagtc
tgtgctgggagtgtatcgcaagaatgttccgaggcaataatgacaatggtacaaaactgt
agtctaatgttgagtaaaaacacaatgagtagaccaccaccgccaggagttttgcgacac
cgtgcgttggaacctttcaatccagctgctttaggaggccagctgttttcttcgaaacaa
gtggacccacttggaaatttaagttcaagccttgcatctatgggtttgggttctagtttg
ggtccacccagtagttccgcgtttaatttgccaggtgctcttggacctttggtatctcct
ggctctccttctcgtcttatgggaccttctccaagcccgttcccaatgttgccattatcg
tcgcaattgcattcaggaccagtcggcacgcaaggaccatccgttctacctggaagtaca
acgatcggcggattaggtcgacttggaccaccgacaggcatcgagaaagcaagaatacct
gaaacgtcgaacttgtttcctgacatgacgcaaaacgtttccaaagaaattgaagacgaa
gcgaacagctatttccagcgaatatacaatcatccaccgcatcctactttatcaattgac
gaagtcctcgatatgttaaagaagtttcaagactccggaagtaaacgggaaagagaagtg
ttcaactgtatgttgagaaacttattcgaggaatatcgattttttcctcaatatcccgat
aaagagctacagatcacggcacaactgtttggtggaattattgagaaaggattgatcaat
agttacgtgacactaggattagccttaagatttgtgttggatgcgcttaggaaatcagaa
ggcagcaagatgtattactttggcataacagctctggatcgtttcaagagtcgtttaaaa
gactaccaaacatactgtgagcacgtcagggcaatccaacatttcagtgagttcccacca
catttaattgagtatatagaatatggattacaggggcaggagcctcccacaagacctcaa
ggtccagtccttcctaaaactttagcagctatgctggcaccagttactacaacatacaaa
actatcacgacaacaacaataacgacaagtactactcaagcaaaatcgtctacgactccg
accacttctctctcggccagaccctccattgctaatgcaacaaacattgatacgttatta
gtagcgacagataaagaagaaaaaatcacgtcaccgccggaagctttacaagataaaact
gcgtttatctttaacaatcttagtcaactgaatctgcagcagaaatgtgacgaaattaga
gaaattgtcacggaagagtattggccttggatggctcaatacttagtgatgaagcgtgcg
agcatagaactaaattttcatgctttatattcgaatttcctggactgtttaaagttgcca
gatatatacaaaatggtgacgagagagacgtttagaaacataaaagttttgttacggagc
gataaagggatagcaaatttttcagatcgttcgcttctgaaaaatctaggccactggcta
ggaatgttgacccttggaagaaacaaacccattttacacatcgatattgatctaaagagt
ctacttgttgaggcgtaccataaaggtcagcaggaacttctttacgtggttcctttcgtg
gctaaagtacttgaaagctgtgcgaaaagccgtgtttttcggccacctaatccttggaca
atggcaattatgaacgtattggcagaattgcatcaggagcccgacttgaaattgaattta
aaatttgaaatcgaagtgttgtgtaaaaatttaagcatcgacgtcggggaattaaaacct
gcgctttatctgaaagatccagacaagttgcgaaacttggaataccaattatctcatcct
aataagaaatctgaatcgaacaataatcaacagcagactcaaggtcctattgaagaacta
gttgatcctggcacgaccggaacgatcgtcccacaaaatgccccagcaaatacgacaccg
tctttgcctatcggtccgccagagccacgtttcaattatatggatatatccgtaacaggc
attgctaatatttctcagcacattacgatcaacaacaatctaccactgttccaagcgcat
ccgcatttgaagcaattggttcgcccagccgttgagagagcaatacaagagtggattcat
cctgtggtcgatcggtccatcaaaatagccttgaccaccagcgaacaaatcgtgaggaaa
gatttcgcgttggatccagaagaagttcgaatgagaactgcggcgaggcacatggtccgt
aacttgaccgctggaatggctatgatcacctgccgtgatcaagttttaacgtcaattggt
acacatttgaaacaagctttgatgcaagctttgatgggcactaccacgccgcaacaaaag
gaactcatagaacaagcagctaatgtggtagctgccgacaatatggagcttgcctgcgcg
tttgtacaaaagacagcgatcgagaaagctattccagagatggataaacgactgttgaat
gaaatcgaattgcggaagattgcacgtcaagaagggaggaggtattgcgatccgttggct
aaatatcaagctgaaaggatgcctgaacaaataagattaaaagtaggcggtgtaacacct
caacagatgtccgtttacgaagagtttgcaagaaatattcccggatttttgccactctct
gaaagggatacgcaagctttactaatgccaaaacccgttacagaacctactgtgactgca
tttgctgcaaatccagcagttgcagttgcaacggcacaacaggttgctgcgtacgcagca
gcagtgagcaacgacgaagtcggagctatgttggaaaagcttgcaaccgaggtcgaagtg
ttgcttgctacgatgggacctgcacctcaactaggtcctactccacaacacgcggctctt
catggtctcttggagtctattatactaacacgaagatcgagagatgcaggagctgcaatg
gcgttacttaaaaaggctgtggaagggttattagacggcccgatttccagtggtgtaata
gattccgaaattatgcggtacagagaacttcatttacgcattttgaagtgtctccaagat
ccacgcgcttatggaatgcagtggacgaacaaacatgtcacacgatgtttaacagaatgc
agagaggagttccgatacaatttcgaagctgtcgattaccttatcaggtctcacttaatc
agtcttccacaatacgatttagctttggctcaagctattgattctggtaatgccatggct
acagcgtttgctatgcagttgattcaggtttacttaattgacgagagacaaaccacacac
gttaccgaatctgatctatttcacacgattgagatacttgccaggattgctcatcatcga
gcaccacccgaaggaatttcattgtacaaattaacaagtttaatggagtctctacgcgct
aatcacgatcctggagtgttagcagatagagctccggccggccctacggcccatattcat
tctgggattctgcaggtgagagctcgcgactttgatgacccacctggattgctggagaaa
acagaatatttactgcgcgagtggatctcgatgcaccacagcccaacgcacgcccgtgat
cctacgaaagcgttcgggatattcgtccaccaaatgaatattcacggaatccttaaaacc
gatgatctcataacaagattcttcaaattgagcactcagatgtgcgtcgacctgtgttat
cgtgctttaactgagacgaatgccgcaccgtctgttgtccgtgcaaagtgtttccattcg
ttagacgcttttgttcgtctggtcgcactgttggtaaagcattctggtgatagtacaaat
actcatacgaagattaatttactgaacaaggtcttgggaatcgtggccggtgtattactg
caggatcacgaaatacgtgggaccgattttcaacaattgccttatcacagaatcttcatc
atgctcttcttggagctctgcgcgccggagcctgtattggaagctgtcaattaccaagtg
ttaacagctttctgccatacgctgcacatacttagaccagcgaaggctccaggattttgc
tacgcttggctagaactagtttcacacagggtgttcatcggacgcatgcttgcgattaca
ccgcaacaaaaatgttggggcatgtacgcgcagctgttgattgatctcttcaagtaccta
gcaccgtaccttcgtaacgccgagctcgctaagcccgtaactctgttatacaaaggcact
cttcgagtattattagtcttattacatgacttcccagaattcctttgtgattatcattat
ggattttgtgatgtaataccgcctaattgtatacagatgaaaaatcttattttgagcgca
tacccaaggaatatgcgattgcccgatccattcacgccgaatttgaaggtcgatatgcta
caagagatagctcatgccccacgagtattgaccaatttcgcgtcccagatacaaccattg
agtttcaaaaaggagcttgactcgtatttaagagcccgcgcgccagttaccttcctctct
gaactgcgtagcaacttgcaagtgtcccaagaagctggctcccgctacaatattcagttg
atgaatgcgctagtgctctacgttgggacgcaggctatagctttcattcgtagcaaggga
cacacgcctaacatgtcgaccatcgcgcattccgcgcacatggacatattccaaaacttg
gcggtcgacctggacacggagggtcgctacttgttcgtgaacgcgatcgcgaatcagcta
cggtaccccaatagccatacgcattactttagctgcacgcttctgtacttgttcgctgaa
gctaacacagaggcgatacaggaacaaattacgagagttctactggagagacttattgta
aatagacctcacccgtggggtcttctcatcaccttcgttgaacttatcaaaaatccgaca
tataaattctggacgcatgagttcgtgcactgtgcaccagaaattgaaaaattattcgaa
tcgatagcacgatcgtgtatggttcaaaaacagcaagtacagccgactccggagccggag
atcccagagtga
DBGET
integrated database retrieval system
