Ceratina calcarata (carpenter bee): 108629016
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Entry
108629016 CDS
T06061
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03020
RNA polymerase
ccal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108629016
09124 Replication and repair
03420 Nucleotide excision repair
108629016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108629016
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108629016
Enzymes [BR:
ccal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108629016
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108629016
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108629016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
108629016
NCBI-ProteinID:
XP_017886833
UniProt:
A0AAJ7J8R8
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLSFVYDLCKSKNICEGGDEMDIKKDNQETQPAERKLGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVKEMMGSGEVISELEREWEQLNKDRAVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVVTETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPSPSYSPTSPSYSPTSPSYSPRSPSYSPTSPSYSPSSPNYTPA
SPSYSPSSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTY
SPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPT
SPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDDTAK
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgactcgaaagcgcctctgcgtactgtgaaaagggtccaattcggcatt
ctatcccctgatgagatacgtcggatgtcggtcacggatggcggcattcgatttccagaa
acgatggaaggtggtcggccaaagctcggcggactgatggatccgagacaaggcgtgatc
gacagaaattccaggtgccagacgtgtgccgggaatatgacagaatgtccaggacatttc
gggcacatagatctggctaaaccagttttccacgtcggtttcataacgaaaacgattaaa
attttaagatgcgtgtgcttctactgctcgaaactgctcgtcagtccgcataatccgaag
atcaaggaaatagtaatgaagaccaaaggtcagccacggaaacgtctcagtttcgtgtac
gatctgtgtaagagcaagaacatttgcgagggaggagacgagatggacatcaagaaagat
aatcaagagacacagcccgcggagaggaaactgggacacggtggttgcggtagatatcag
ccgaatcttcgtagatcgggattagacgtaactgccgaatggacgcatgtaaacgaggat
tcgcaagagaagaaaatggcgttgacggcggagagagcgtgggagattctgaagcacatc
acggacgaagaatcgttcatactcggtatggatccgaaatttgcgcgacccgattggatg
gtggtgacggtcctgcccgttccgcctctctccgtacgaccagcggtgatcatgtacggt
tcggcgaagaatcaggacgatctgacgcacaaactggccgacattataaaagcgaacaac
gaattaattagaaacgagcaagcgggcgcagcggcgcacgtgatatcggagaacataaag
atgttgcagtttcacgtcgcgacgttagtggacaacgatatgcccggcatgcccagagcc
atgcagaaatcgggcaagccgttgaaagctataaaggcgagactgaaaggaaaggaaggt
agaatacggggaaatttgatggggaaacgagtcgacttttcggctcgtaccgtcatcacc
cccgatcccaatctgcggatcgatcaagtcggcgtgccccgcagtatcgcgcagaacttg
acgtttcccgagatcgtgacgcctttcaacatcgacaagatgcaagagcttgtgagacgt
gggaactcgcagtatccgggggcgaagtacatcgtcagagataacggggaaaggatcgac
ttgagattccacccgaaaccgtccgatctgcacttgcagtgcggttacagggtggagcgg
cacattcgagacggcgatctggtgatcttcaatcgacagcctaccctgcacaagatgagt
atgatgggccaccgggtgaaagttctcccttggagcacgttccgtatgaacctcagttgc
acgtcaccttacaacgccgacttcgacggtgacgagatgaatctgcacgttccgcagtcc
atggagacccgagctgaggtggagaacattcacgtgacgccacgacagatcatcacgcct
caagcgaacaaaccggtgatgggcatcgtgcaggacacgttgactgcggtcaggaagatg
accaagagggacgtgttcatcgagaaagaacagatgatgaacatcctcatgttcttgccc
agttgggacgggaaaatgcctcaaccgtgcatcttgaaaccgaaaccgctgtggaccgga
aagcagatattctccctgatcataccgggcaacgtgaacatgatcagaactcatagcaca
catccggacgaggaggacgacggtccgtacaaatggatctcccccggcgacacgaaagta
atggtggaacacggcgaactggtgatgggaatactctgcaagaagacgttgggtacctcc
gccggatctctgcttcacatttgtatgttggaactgggacacgaagtttgcggccgattt
tacggcaacatccagaccgtgatcaacaactggctattgttggagggtcactcgatcggt
atcggtgacaccatcgccgatccgcagacttatctagagatccagaaggccatcagaaaa
gcgaaagaggacgtgatagaggtgatccagaaggctcacaacatggaactggagccgact
cctggtaatacgctgaggcagacgttcgagaatcaagtgaacagaattttgaacgacgct
cgtgacaagaccggtggctctgctaagaagtcgttgaccgagtacaataatctaaaggct
atggtggtgtcgggctcgaaggggtccaacatcaatatctctcaggtgatcgcctgcgtg
ggtcagcagaacgtggaaggtaaacgtatcccgttcggttttcgcaagagaacgctgccg
catttcatcaaagacgattacggtcccgagtcgagaggattcgtcgagaactcttacctc
gccggtctgaccccgtcggaattttatttccacgctatgggaggccgcgagggtctcatc
gataccgctgtgaaaaccgcggaaaccggttacattcaacgtcggctgataaaggccatg
gagtccgtgatggtgcactacgacggaaccgtgaggaactccgtgggccaactgatccaa
ttgcgttacggcgaggacggtctgtgcggtgaaaccgtcgagttccagaatctgcccacg
atcaaattgagcaacaaggcgttcgagaagaagttcaagttcgatccgacgaacgaacga
tacctccgccgtatcttcaacgaggacatcgtaaaggagatgatgggatccggggaggtg
atatcggaattggagcgcgaatgggaacagctgaacaaggatcgcgccgtgctcagggag
atcttccccagcggcgagtcgaaggtcgtgttgccttgcaatctgcagagaatgatctgg
aacgtgcaaaagatcttccacataaacaagcgtgcaccgaccgatctcagtccgatgagg
gtcatacagggtgtgaaagatctgctggacaagtgtatcatcgtcgctggtgacgacagg
cttagtaaacaggcgaacgagaacgcgacgttgctgttccagtgcttggtcagatccact
ctgtgtacgaagtgtgtctccgaggagttccgattgtccagcgaggcgttcgaatggctg
atcggtgagatcgagaccaggtttcaacaggcccaagtgtcgcccggcgaaatggtgggc
gcattggccgcgcagtcgctcggcgagcccgcgacccagatgactttgaacacgttccac
ttcgcgggtgtatcgtcgaagaacgtgaccctgggcgtgcccaggttgaaagagatcatc
aacatcagtaaaaagccaaaggctccgtctctgacggtcttcttgacgggggccgcggcg
agggacgccgagaaagcgaagaacgtgctctgccgactggaacacaccacgctgaggaaa
gtcacggcgaacactgccatctattacgatccggacccacagaacacggtcatcgcggag
gatcaggagttcgtcaacgtttattacgagatgcccgacttcgacccgaccaagatatcg
ccgtggctgcttcgcatcgaattggaccggaagaggatgaccgacaagaaattgaccatg
gaacagatcgcggagaagatcaacgcgggcttcggcgacgatctcaattgtatattcaac
gacgacaacgctgagaaattggtcctgcgaatcaggataatgaacagcgacgacaataaa
ttccaagacaccgaggaggagaccgtggacaagatggaggacgacatgttcctccggtgc
atcgaggcgaacatgctcagcgacatgacgttacagggtatcgaggcgataggaaaagtg
tacatgcatctgccacaaacggactcgaagaagcgcatagtcgtcacggaaacgggcgag
ttcaaggcgatagcggaatggttgttggaaacggacggcacgagcctgatgaaggtgttg
agcgaaagggacgtcgacccggtgagaacgttcagcaacgacatctgcgagatattccaa
gtgttgggcatcgaggccgtgaggaagtcagtggagaaagagatgaacgctgttctacaa
ttctacggcctctacgtgaattatcgtcacctcgcgttgctctgcgacgttatgacggcg
aaaggccacctgatggccatcacccgtcacgggatcaaccggcaggacaccggggctctc
atgagatgttccttcgaggaaacggtcgacgtgctgctggacgcggcgtctcacgcggag
gtcgacccgatgagaggagtctccgagaacatcatcatgggacagctaccgcggataggc
acgggatgtttcgatctgctgttggacgctgagaagtgtaaggccggcatcgaaataccg
atggcggtgggcgccggtgtaatgggaaccgccgggatgttcttcggcagcgtggctacg
ccgagcatgagtcctcaaatgacgccttggatgggtgccacgcccggttacggcgcctcg
agcatgtcaccggcgctcggcagcggtatgacaccgggtggagcgtgcttctcgccttct
ggcgcgtcggacgcctcgggactctcgccagcgtattccgcgtactcgccgcaacccgga
agtccagggagtccgggacccagcatgagcccgtatccgatgtcaccggcgggcggcgct
tcgccgagttactcgcccacgtctcccgcttacttaccaacctcgccgagcataacaccg
tccagtccgaattattcgccgacgagcccgacttactcgccgaccagcccgaattactcg
ccgaccagtccgagctattcgccgaccagcccgagttactcgcctacgagtccgagctat
tcgccgaccagtccgagctattcgccgacgagtccgagttactcaccgaccagtccgaat
tattcaccgaccagtccgagttactcgccgacgagtccgagctattctccgaccagcccg
agttactcgccgaccagcccgagttactcgccgaccagtccgagctactcgcccagcccc
agttactcgccgaccagtccgagttactcgccgacgtctccgagttactcgccgaggagt
ccgagttactcgccaacgagtccgagctactcgccgagctctccgaattacacgcctgcc
tcgccgtcttactccccgtcgagcccgagctactcgccgagctctccgcaatattcaccg
gccagtccctcgtactcgccgagcagcccgaagtattcaccgacgagtccgtcgtattcg
cccacttcgccctcgttcgccggtacctcgcctcagtacacgccggcgagtcccacgtat
tcgccgacgagcccaacatactcgccgaccagcccgtcttactctcccagctcgccccag
cacacggcatcgggcagcaccagatactcgccgagcagtccaaactattcgccgaccagc
ccgacctactcacccacgagtccccagtactcgccgtcgagcacgaaatactcgccgacg
agtccgacttacacgccgacgagtccgagttactcgccgacgagcccgacttactcgccg
ccagtgcctggttactcgcccacgagtcccacttactcgccggcctcgccagcttacgag
acggacgacacggccaagtga
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integrated database retrieval system
