KEGG   PATHWAY: ccar00020
Entry
ccar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cyprinus carpio (common carp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccar00020  Citrate cycle (TCA cycle)
ccar00020

Module
ccar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccar00020]
ccar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccar00020]
ccar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccar00020]
ccar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccar00020]
ccar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccar00020]
Other DBs
GO: 0006099
Organism
Cyprinus carpio (common carp) [GN:ccar]
Gene
109046286  [KO:K00030] [EC:1.1.1.41]
109048128  [KO:K01647] [EC:2.3.3.1]
109048132  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109048235  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
109048926  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
109049698  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
109049870  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109054509  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
109055013  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109056259  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
109057370  [KO:K01648] [EC:2.3.3.8]
109058506  [KO:K00237]
109058983  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
109062383  [KO:K00161] [EC:1.2.4.1]
109063083  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
109063929  [KO:K00031] [EC:1.1.1.42]
109066157  [KO:K00031] [EC:1.1.1.42]
109067623  [KO:K00031] [EC:1.1.1.42]
109068193  [KO:K00382] [EC:1.8.1.4]
109074263  [KO:K00236]
109076924  [KO:K00162] [EC:1.2.4.1]
109077988  [KO:K00658] [EC:2.3.1.61]
109079646  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
109079692  dldh; LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109080026  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
109081442  [KO:K00030] [EC:1.1.1.41]
109083286  [KO:K00030] [EC:1.1.1.41]
109083328  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
109087513  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
109088175  mdh2; LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109088184  [KO:K00026] [EC:1.1.1.37]
109089007  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109091325  aco1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
109092108  [KO:K01596] [EC:4.1.1.32]
109097361  [KO:K00164] [EC:1.2.4.2]
109098216  [KO:K00235] [EC:1.3.5.1]
109101079  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109101480  [KO:K00235] [EC:1.3.5.1]
109103191  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
109104289  [KO:K00030] [EC:1.1.1.41]
109106374  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
109107205  [KO:K00164] [EC:1.2.4.2]
109107634  [KO:K00164] [EC:1.2.4.2]
109108013  mdh1ab; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109108490  [KO:K00025] [EC:1.1.1.37]
109111213  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
109111237  [KO:K00234] [EC:1.3.5.1]
109112177  [KO:K01958] [EC:6.4.1.1]
109113530  [KO:K01648] [EC:2.3.3.8]
122133908  [KO:K01681] [EC:4.2.1.3]
122134115  [KO:K00026] [EC:1.1.1.37]
122135089  [KO:K00235] [EC:1.3.5.1]
122135609  [KO:K00030] [EC:1.1.1.41]
122140210  [KO:K00658] [EC:2.3.1.61]
122142522  [KO:K00030] [EC:1.1.1.41]
122143707  [KO:K00161] [EC:1.2.4.1]
122145268  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122145602  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122145671  [KO:K01958] [EC:6.4.1.1]
122148785  [KO:K00234] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccar00010  Glycolysis / Gluconeogenesis
ccar00053  Ascorbate and aldarate metabolism
ccar00061  Fatty acid biosynthesis
ccar00062  Fatty acid elongation
ccar00071  Fatty acid degradation
ccar00190  Oxidative phosphorylation
ccar00220  Arginine biosynthesis
ccar00250  Alanine, aspartate and glutamate metabolism
ccar00280  Valine, leucine and isoleucine degradation
ccar00350  Tyrosine metabolism
ccar00470  D-Amino acid metabolism
ccar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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