Cyprinus carpio (common carp): 109050653
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Entry
109050653 CDS
T05134
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109050653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109050653
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109050653
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109050653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109050653
NCBI-ProteinID:
XP_042609159
Ensembl:
ENSCCRG00000046160
UniProt:
A0A9R0AS16
LinkDB
All DBs
Position
B25:11967493..11988157
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AA seq
2020 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIGAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDSSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVCGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVF
CFADYPCHAVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLTAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPSPSTAFPGIPLSSPLQGPL
STSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEA
NSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYRFFPQYPDK
ELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDY
PQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTPK
VPQPGQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTERI
VEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSL
YSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNK
PILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLAE
LHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPEE
MLPIVTTGVDSVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININI
PLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARVAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDL
EQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADTD
LLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTNAHSR
ANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
PTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDV
RQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFW
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctcttctgaactccagtaacgcagac
ctccgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattggcgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaacaagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctggggatgatggcccgcact
cactctgggctgtctgatggcattggcctgcagtccatctcaaatccagtgggtggtggg
atctggagtgatgggaaggacaagagtgacagctctcaggcccacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggatcacccaggcttcctgatccgggacagtaaggggcttcagatagtggtctgt
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagctgtcattcattcaacactcgctgatgagtcctgacgtcttt
tgctttgctgactacccctgtcatgctgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggagagtctcttgcgc
ctctctgaagtcgggcattatgaacaggtgaagcagctcttcagctttcccatcaagcac
tgcccggacatgctagtgctggcgctgctacagatcagcacctcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccctaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggctgagtggtacatgagaggagagcagtacgaccaggccaagctatcccgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccgttt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaattcgagagcacggggagccgttcatccaggcgtgtgtcacattc
ctgaagagacgttgtccctctatcttgggtggtttggccccagagaaagaccagccgaaa
agtgctcaacttcctcctgaaacactggccaccatgcttgcatgtctgcagtcttgtgct
gggagtgtatctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatttcacctgtgcagatggaccctctcactgcgatgggctca
ttgagtctaggtgtctcgtccacctctcacaccccgagcatgcagggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaac
ccaagccccagcacagctttcccaggaatccccctctcttctccgctccaaggtcctctg
agcacaagcttgactgggattggctcaggtttgggcatgcctgctgtcagcagtgacccc
ttcggcaccaggaagatgagcacaccgggtctgaacccacccaccttccagcagactgac
ctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgaggca
aacagctacttccagcgcatctacaaccatccgccgcaccccacaatgtccgtggatgag
gtactggaaatgctgcagagatttaaggactcaagcatcaagcgggaacgggaggttttt
aactgcatgctgaggaatctgtttgaggagtaccgattcttccctcagtatccggacaaa
gagctacacatcaccgcttgcctctttggggggatcattgagaaaggcctggtcacgtac
atggcgctgggcttggccttacgatatgtcctggaagccttacgcaaacctttcggatca
aagatgtattattttgggattgctgcactagatagatttaaaaatagactgaaggactat
ccccagtattgtcagcacttggcgtcaatagcccatttcctgcagtttccgcaccattta
caagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggctcc
attaccaccccaggtagcctggctttagcccaagctcaagctcagtctcaaacccccaaa
gtccctcaacctggccaggccagcaccttagtgaccacagccaccacaacaaccactgct
gccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtgccacct
tcaatcaacaccacaaacattgacaccttgttggtggccacagaccaaactgaaaggatc
gttgagcccccagagaatgttcaagagaagattgcattcatcttcaacaacttgtcccaa
tcaaacatgtcccaaaaggtggaagagctgaaagagactgtgaaagaagaattcatgccc
tgggtctctcagtacctggttatgaagcgtgtcagcattgagcccaacttccacagcctg
tattctaacttcctggacacactgaaaaacccagagtttgtcaagatggttctcaatgaa
acttacagaaacatcaaggtcctccttacctctgataaggcagctgctaacttctcagat
cgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagctaaaaacaaa
cccatcctgtacacagacctggagctgaaatctctcttgctggaggcttatgtgaaaggc
caacaggagttactgtatgttgtcccctttgtggccaaagtcttggaatcaagtctacgg
agtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggcggag
ctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctctgcaag
aatctgtctttggacatcagtgagctaaaaccaggaaacctactgagagacaaagagaag
ctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaagag
atgctgcctatagttacaacaggagtagattctgttccatttacagctgctccgtcaact
ccggccaccaccacgacctgtacggccactggaccacccacaccacagttcagctaccat
gacatcaatgtgtatgccttggctggcctggccccgcacatcaacatcaatattaacatc
ccattactacaggcccatcctcagctgaagcagtgtgtgagaccagcaattgagcgtgct
gtacaggaactggttcacccagtggtggaccgatccattaagatcgccatgaccacctgt
gagcagatcgtcaggaaggacttcgcactagactctgaggagtctcacatgcgtgtggcc
gcccaccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagggagcct
ctgctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctccc
acaccccagcagagagagatgatggaagaggcggctgctcgcgtcgcacaggacaactgt
gagcttgcttgttgctttatccagaagacagcagtggagaaagctggaccagagatggac
aagaggctggcaactgagttcgagctgaggaagcatgctcgccaagaaggccgtcgctac
tgtgaccctatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaag
gtcggtggagtggatcctaaacagcttgctgtttatgaggagtttgcccgtaatgtccca
ggcttcctacccagtaatgacctgtctcagccaactggtttccttgcccagccaatgaag
caacaggcatggcccacagatgatgttgctcacatctatgataagtgcatttcggacctg
gagcagcacctgcatgcaattccacctgccctggccatgaacccacagacccaggccatt
cgcagccttctggaggctgttgtcatggctagaaactcccgtgatggcatagctgccctg
ggccttttgcagaaggctgtggagggtctgctggatgccaccagtggcgctgatactgat
cttttgctgagctacagggagtgccacctactggtgctgaaagccctacaggacggtcgt
gcctacggtccgcaatggtgcaacaaacaaatcaccagatgcctgattgagtgcagagat
gaatacaagtacaacgttgaggccgtagagctcctcattagaaaccacctggtcaacatg
cagcagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtg
gcatttgccatgcagctggtgaagctcctactggttgacgaacgtagcgtgagtcacatc
actgaagcggatctctttcacaccattgagacgctgatgaggaccaacgcccactccaga
gccaatgctcctgaaggtttgccccagctgatggatgttgtccgctccaactatgaggcc
atgatcgatcgtcaccatggtgggccaaacttcatgatgcactctgggatttctcaagcc
tctgagtatgatgacccaccaggccttagagagaaagcagagtacctgctgagagaatgg
gtcaacctttaccactcagcagctgcaggaagagacagcaccaaggccttctctgcattt
gttggccagatgcaccagcagggcatcctgaaaaccgatgacctgatcactcgcttcttc
cggctgtgcacagaaatgtgcgtggagatcagttaccgtgctcaagccgaacagcagcac
ccaaccaccagccctgccatcatcagagccaagtgctaccataaccttgatgcttttgtt
cggctcattgcacttcttgtcaaacactccggagaggccaccaacacagtcaccaaaatc
aacctgctcaacaaggttctaggcattgtggtgggtgtattgatccaggatcacgatgtg
aggcagacagagttccagcagcttccgtaccacagaatcttcatcatgctcctgctggag
cttaacgcaccagagcatgtgctggagaccatcaacttccagaccctcactgccttctgg
taa
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