Cyprinus carpio (common carp): 109050662
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Entry
109050662 CDS
T05134
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109050662 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109050662 (cnot1)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109050662 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109050662 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
109050662
NCBI-ProteinID:
XP_042571278
Ensembl:
ENSCCRG00000046459
UniProt:
A0A9Q9VU74
LinkDB
All DBs
Position
A25:8974449..8991852
Genome browser
AA seq
2389 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASPDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQLVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLTAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGTTPFSSQLQGT
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QSQTPKAPQPAQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVAT
DQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGI
MNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKE
TKPPEEMLPIITTDSVPFTVAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINI
NVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESH
MRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIA
QDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQ
IRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKC
ISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSG
ADTDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNH
LVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSGSHITEADLFHTIETLMRTN
AHSRANAPEGTPSLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKA
EYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQLPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTMVL
GIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILR
PTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKP
MQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFT
PNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPG
NRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFL
NAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcagatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacaatttctgatccaggagtgtgtgtgt
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcagaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgatctcctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctgctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacattgtgcagagatttcccgcaggagcgctgtcct
gtggtgcttgcaccactgttgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaataagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcctgatgagtgcaggaacataatcctgcagtat
ggtgtgcgagaggtgaccgccagtcaggtggccagagtgttgggcatgatggcccgcact
cactccgggctgtccgacggcatcggcttacaatccatctcaaatccagtgggcagtggg
atctggagtgatgggaaggacaagagtgacggctctcaggctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccacccaggcttcctgatccgggacagtaaggggcttcagttagtggtctat
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatatacagaccatgg
aagcatgcagaaggacagctgtcgttcattcaacactcgctgatgagtcctgacgtcttc
tgctttgctgactatccctgtcatactgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctcagaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaaacac
tgcccggacatgctagtgctggcacttctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctctaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcagtacgaccaggccaagctatctcgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggaaccattcatccaggcatgtgtcacgttc
ctgaagagacgctgtccctctatcatgggtggtttggcgccagagaaagaccagccaaaa
agtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctatcagagacaatcttgactatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttaccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgtccagatggaccctctcactgcaatgggctct
ttgagtctaggtgtctcgtccacctcccacaccccgagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccaatccccagccaaagccttctcaaacctgcccaac
ccgaaccccagcacagctttcccaggaaccacccccttctcttctcagctccaagggact
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagcagcgac
cccttcggcactaggaagatgagcacaccggggctgaacccgcccaccttccagcagagt
aagatgaaggcctctgacctctctcaggtgtggcccgaggcaaaccagcactttagtaag
gagatagatgatgaggcaaatagctacttccagcgcatctacaaccatcccccgcaccca
acaatgtccgtggatgaggtgctggaaatgctgcagagatttaaggactcaaacatcaag
cgagaacgggaggtttttaactgcatgctgaggaatctgttcgaggagtaccgattcttc
cctcagtatccagataaagaactgcacatcaccgcttgcctctttggggggatcattgag
aagggcctggtcacgtacatggcgctgggcttggctttacgatatgtcctggaagcctta
cgcaaacctttcggatcaaagatgtattactttgggatcgctgcactagatagatttaaa
aatagactgaaggactatccccagtactgtcagcacttggcatcaatagcccatttcctg
cagtttccacaccatttacaagagtatatagagtatggccagcagtccagagaccctcct
gtgaagatgcaaggctccattactacccctggcagcctagctttagcccaggctcaagct
cagtctcagacccccaaagccccacaacctgcccaggccagcaccttagtgaccacagcc
accacaaccaccaccgctgccaaaaccacaaccatcacgagacctacagctgttggaccg
aagaaagatgtgccaccttcaatcaacaccacaaacattgacaccttgttagtggctaca
gaccagactgaaaggatcgttgagcccccagagaacgttcaggagaagattgcgttcatc
ttcaacaacttgtcccaatcaaacatgacccaaaaggtggaggagctgaaagagactgtg
aaagaagaattcatgccctgggtctctcagtacctggttatgaagcgtgtcagcattgag
cctaacttccacagcctgtattccaatttcctggacacactgaaaaacccagagtttgtt
aagatggttctcaatgagacgtacagaaacatcaaggtccttcttacctctgataaggca
gctgctaacttctcagatcgatccctgctgaagaatttgggtcactggcttggaatgatc
accctagctaaaaacaaacccatcctgtacacagacctggagctgaaatctctcttgcta
gaggcttatgtgaaaggccaacaggagttactgtatgtcgtcccctttgtggccaaagtc
ttggaatcaagtctgcggagtgtgatcttcagaccgcagaacccttggaccatgggcatc
atgaatgttctggctgagctccaccaggaacatgacttaaagcttaacctcaagtttgag
attgaggtgctctgcaagaatctgtctttggacatcagtgagctgaaacccggaaacctt
ctgagagacaaagagaagctgaagaacttggaggagcagctctctgcaccaaagaaagag
accaagcctcctgaagagatgcttcctataattacaacagattctgttccatttacagtt
gctccctcaactccggccaccaccacaacctgtacggccactgggccacccacaccacag
ttcagctaccatgacatcaatgtgtacgccctggctggcctggccccacacatcaacatc
aatgttaacatcccactactgcaggcccaccctcagctgaaacagtgtgtaagaccagca
attgagcgtgctgtacaggaactggtgcacccagtggtggaccgatccatcaagatcgcc
atgaccacctgtgagcaaatagtcaggaaggacttcgcacttgactctgaggagtctcac
atgcgtgtggccgcccaccacatgatgcgtaacctgactgccggtatggccatgatcacc
tgcagagagccgctgctcatgagcatcgccaccaacctgaagaacagctttgctgcagct
cttagggctcccacaccccagcagagagagatgatggaagaggcggctgctcgcatcgca
caagacaactgtgagcttgcttgttgctttatccagaagacagcagtggagaaagctgga
cctgagatggacaagagactagcaactgaattcgagctgaggaaacacgctcgccaagaa
ggccgtcgctactgtgaccccatggtgctcacctatcaggctgagcgcatgccagagcaa
atcagactgaaggtcggtggagtagatcctaaacagctggctgtttatgaggagttcgcc
cgaaatgttccaggcttcctacccagtaacgacctgtctcagcccactggtttccttgcc
caaccaatgaagcaacaggcatggcccactgatgatgtagctcacatctacgataagtgc
atttcagacctggagcagcacctgcacgcaattccacctgcgctggccatgaacccgcag
acccaggccatacgcagccttctggaggccgttgtcttggctaggaactcccgtgatggc
atcgctgccctgggccttttgcaaaaagctgtggagggtctgcttgatgccaccagtggt
gctgatactgatctgctgctgagctacagggagtgccatctgctagtgctgaaagcccta
caggatggtcgcgcctacggcccacagtggtgcaacaaacaaatcaccagatgcctgatt
gagtgcagagatgaatacaagtacaacgttgaggccgtggagctcctcatcagaaaccac
ctggtcaacatgcagcagtatgacttacacctggctcagtccatggagaacgggctcaac
tacatggccgtggcattcgccatgcagctggtgaagatcctgctggttgacgaacgcagc
gggagtcacatcaccgaagcggatctcttccacaccattgagacgctgatgaggaccaac
gctcactccagagccaatgctcctgaaggaacccctagtttgccccagctgatggatgtt
gtccgctccaactatgaggccatgatcgatcgtcaccatggtgggccgaacttcatgatg
cactctgggatttctcaagcctctgaatatgatgacccaccaggccttagagagaaggca
gagtacctgctgagagaatgggtcaacttgtaccactcggcagctgcaggaagagacagc
accaaggctttctctgcgtttgttggccagatgcaccagcagggcatcctgaagactgat
gacctgatcactcgcttcttccggctgtgcaccgaaatgtgtgtggagatcagttaccgt
gctcaagctgaacagcagcttccaaccaccagccctgctattatcagggccaagtgctac
cataacctggacgcttttgttcggctcattgcgcttcttgtcaaacactccggagaggcc
accaacacagtcaccaaaatcaacctgctcaacaaggttggaatgcttacaatggtttta
ggcattgtggtgggtgtactgatccaggatcacgatgtgaggcagacagagttccagcag
cttccgtaccacagaatcttcatcatgctcctgctggagctaaacgcaccagagcatgtg
ctggagaccatcaactttcagacgctcactgccttctgcaataccttccacatcctgagg
ccgactaaagcacctggttttgtctatgcttggctggagctcatctcgcaccgtatcttc
attgccaggatgcttgcacataccccacaacagaagggttggccaatgtatgcccagctg
ctgatagacttgttcaaatatcttgcacccttcctaaggaatgttgaactcaacaaacct
atgcaaattctctacaagggaacacttcgtgtactgcttgtcctgctacatgactttcca
gaattcctgtgcgactaccattatggcttctgcgacgtcatcccgcctaactgcatccag
ctgaggaacctgatcctgagtgccttcccccgcaacatgaggcttccagaccccttcacc
cctaatctgaaggtggatatgctgagtgagatcaacattgctccccgcatcctcacgaac
ttcaccggtgtgatgccgtcccagtttaagaaggatcttgactcttacctcaagacgcgt
tctcctgtcacctttctttctgagctgcgcagcaacctgcaggtgtccaacgagcccggc
aaccgctacaacattcagctaatcaatgctctggtgctgtacgttggaacccaggccatt
gcccacatccacaacaagggcagcactccctccatgagcaccatcactcactcggctcac
atggacatcttccagaaccttgcagtcgatcttgacactgagggccgctatctgttcctg
aatgcgatagccaatcagctgcgttatccaaacagccacacacactactttagctgtacc
atgctgtatctgtttgccgaggccaacgctgaagccattcaagagcagatcaccagggtc
ctgctggagaggctgattgtgaacaggccgcacccgtggggtctgctcatcaccttcatt
gagctgatcaagaatcctgcctttaagttctggagccatgattttgtgcactgtgcacca
gagatcgagaagttgttccagtcggtggctcagtgctgtatggggcagaagcaagcccag
caggtgatggagggaacaggtgccagttag
DBGET
integrated database retrieval system
