Cyprinus carpio (common carp): 109070828
Help
Entry
109070828 CDS
T05134
Name
(RefSeq) tetratricopeptide repeat protein 37-like isoform X1
KO
K12600
superkiller protein 3
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109070828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109070828
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109070828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_11
TPR_16
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_MalT
Fis1_TPR_C
TPR_15
SHPRH_helical-1st
PknG_TPR
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
109070828
NCBI-ProteinID:
XP_042612590
UniProt:
A0A9Q9Y3M9
LinkDB
All DBs
Position
A5:complement(27286080..27304637)
Genome browser
AA seq
1571 aa
AA seq
DB search
MKKMSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPD
QAQTAYRKATELEPEQLLAWQGLTNLYEKSDQADFKAELPKTYQKLITLYEISDKAKCLE
VSKKLVEVYQLEKNYLQVARVWRRLIQVREGEDGVEDSELLELWKEMTRLLQDSVEDQDN
ETQQHLILAFERVLQMTVDVPSEAHRSLSWDYIKCLSKLPHEVAKLKEVCDATLSRYPTH
SYPLEALSEHYIRTGDCSEEAVCCFSRLSELDPNNSQAHFGLGIKACQDKKYEDAIKRIS
LGLKCMRSSIIGWYNLALAQLKMHKYSDSATASSQGLKASVGNSDDWTHKLQKLKLEALV
RTGRDQDADEALQILTQISDAKNDSVLLALKGRAHLQKGQTEEAFQVSAELLSSHPGSVE
GLTLKGLAHVAKEQHTQAEESFLEALSGSPDNGELFFLLGRLYWNLGEEMRRDRSKAHTH
LLKAAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQ
GDMDSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCW
ECLGEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQ
EDYVPALKGLGECLLALARNALDDYLDGRAVDLIQNAIHYLFRAVNQRPDLSCLWKLLGD
ACTTSRTVSPNRAKVLVPGALCGMDPPDQSHTLDQRQLLTLGERCFGRALKLMPEAPSLW
CDLGLNYYHQSKLLNCLYPEDDAHSLLEKAMQCVKKAIMLDSANHTYWNTLGVVAMAKGI
ENFALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIG
QAIIAETVGSFDTMDLFRHTTELSTHTEGVKGYAYCVCSTLLDKSNRDSELYLYNIVQMN
AISAAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHRDKLS
FALRGYGHALSDDGQWEEAVRIYSSTPLEELHDLIGLALTCFRIGRLPESVQAYEKALVV
ASSEKEKACILTALALIQHRLGSMDHAKTLLFKCSMLKEPVPESLQCLCALGLVHGDVTL
ASATLTELLKLGEPMGGAVEERCLLTCTLLALQGNFSGVHREAARAIHRNPGNPSLWALL
SRLVPQYCPNKADGGAVAGSVACQASLTLGKRALLYSGVNQLASGRHSGEDRRRNALKTI
QRAVLLCPDDPAGWAGLMAACHTENTACLLTGSAPRREDLERAHMTLVSEKVKSLQAEDG
LLAQALEGWMLQQAVTGLKQSSQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCEHLLLSK
AGNCVPPTVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQLGDH
FGKMSSLLRLALLALMPCLAGVCVSEWKDLVLEASAEVLKMGSSPVALLFQALLQFSMKM
GARETRRLLEKIVYASASGSSETIVSVARWYLLRHLHSKDDLELIDTLLVKATAEGDSRL
VDFHRRLYPSS
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgtccagtaaagaagtaaaagcggaactaaaaagtgccagagaagctatc
aaaaacaaagagtttaaagaagctttgaaacattgtaaggctgttctcaaacttgagaag
aataactacaatgcttgggtgtttattggagtggcagctacagagctgcagcagccggat
caggctcagaccgcctacagaaaggccactgaactggagccagagcagctgcttgcatgg
cagggtttaacaaatctgtacgaaaaaagtgaccaagcagatttcaaagctgagctgcca
aagacataccagaaacttattacactgtatgaaatctcagacaaagcaaaatgtttagaa
gtgagcaagaagttggtggaagtctatcagctggagaagaactatttacaggtggccaga
gtgtggaggaggttaatccaggtgagggagggagaggacggggtggaggattcagagctg
ctggagctgtggaaggagatgaccagactcctgcaggactctgttgaggatcaggacaat
gagacccagcagcacctgatattagcatttgaaagagttttgcaaatgacggtagatgtt
cccagtgaagcccacaggagcctttcatgggattacattaaatgtctttctaagcttcct
catgaggtggccaagctaaaggaagtttgtgatgccacactgtcccgctatcccacacac
tcctaccctctagaggccctgagtgagcactacatcagaacaggtgattgcagtgaggaa
gctgtctgctgtttcagccgtctatcagaactggatccaaacaactcgcaagctcacttt
ggtctcggtattaaagcttgtcaggataaaaaatatgaggatgccatcaaaaggattagt
ctaggactgaagtgtatgcgctcctccatcattggctggtataatcttgctctggctcaa
ctaaaaatgcacaaatactctgacagcgccacagcttccagccaagggctgaaggcgagt
gtggggaactctgatgactggactcataagctgcagaagttgaaactagaggctctggtg
aggacaggaagagaccaggatgctgatgaagctctgcagatccttacacagatttcagat
gccaaaaatgactcagtgcttttagcgttgaaaggaagagctcacttgcaaaagggccaa
actgaggaagcatttcaggtttcagctgagctgctgagctctcacccaggatcagtggag
ggtctcactctgaagggactggcacatgttgctaaagaacagcacacacaagctgaagaa
agctttctggaggctttatccggaagcccagataatggggagttgttcttcctgctgggg
cgtctgtactggaacctgggagaggaaatgcgaagggaccgcagcaaagcccatacacat
ttactcaaggctgctaaactggacccgtatcttggttcagtgtttcgtttcctgggtcat
tactatagagaggtagcaaaagatcagggcagagccagaggctgctataagagagcgttt
gagctggattcctctgatgcggaggctggagcggccactgtagacctcagcatggagcag
ggggacatggactcagctctgactgttctgcagtccgtaacagagagagccactccaggc
tctgctaaatgggcctggatgaggagaggtctctaccacctcaagattggccagcatcaa
caggccattgcagatctgcaggcggcattgagggctgatcctcaggactgggtgtgctgg
gaatgtttaggtgaggcttacctgaaccgcaggagtttcacagctgccctgaaagccttc
gataaagcacatacactgcagcccacttccatctacagcctctatcagaccgccgccatc
aaacagatcctcggccggtttaaagaagctgctgcagagtacaggcagatcttagagcag
gaggactacgtgccagcactgaaaggtctgggtgaatgcttgctagccttggctagaaat
gcactggatgactatcttgatggaagagctgtagatttgatacagaacgccatccattac
ctcttcagagctgtaaatcaaaggccagacctgtcatgcctgtggaagttactaggtgat
gcctgcaccacctccagaactgtgtctccaaaccgagccaaagtgctggtgcctggagct
ctatgtggaatggatccacctgatcagagccatacactggaccagagacagctcctcact
ctgggagaaaggtgctttggtcgtgctttaaaactgatgccggaggcccccagtctgtgg
tgtgacctgggcctcaactactaccaccagtccaaactgctcaactgcctttatcctgag
gatgatgcacactccctgctggagaaagccatgcagtgtgtgaagaaggcaatcatgctt
gacagtgcaaatcacacatattggaacaccctcggggtggtcgccatggcaaagggaata
gaaaactttgcacttgcacaacactgcttcatcaaatccgtaaaagctgagtcaaataat
gtggttgcatggaccaaccttggtgctttgtatctgaagaagggaaatatagagctctca
catgaagctttcaagattgctcagtctctagagcctctctatgtgaactgctggatcgga
caggccatcattgctgagacagtgggcagttttgacaccatggatcttttcagacacacc
acagagctgagcacacatacggagggagtgaagggttatgcatactgtgtttgctccaca
ctgctggacaagagcaacagagactctgagctctacctctacaacatagtccagatgaat
gccatctctgcagcccaggtggctctgagcaagtacactgagaggattcagacagaccca
gacgccttcatcatgcttggatacctgaacacacacctgcagctgaagaaacaggccacc
gaggcatatcgcagagctgtcgagttgcttcaggcgtcccctcacagagacaagctcagc
tttgctctgaggggttatggacatgccctcagtgatgatggacagtgggaagaagcagtg
cgtatttattcctccacaccactagaggagctccatgatctcatcgggcttgcgctcact
tgtttcagaatcggtcgcctgccagagagcgttcaggcctatgagaaagctcttgtagtt
gcctctagcgagaaggaaaaagcctgtatactcactgcacttgccctgatacagcacagg
ttgggcagcatggatcatgccaaaacacttctcttcaagtgctctatgctgaaagagcca
gtaccagagagtctgcagtgtctgtgtgctctgggtttggttcatggtgatgttaccctg
gcaagtgctacacttaccgagctgctaaaactaggggaacctatgggaggcgctgtggag
gagcgctgtctgctcacgtgcaccctgctggccctgcagggcaactttagcggcgttcac
agggaggctgctagggctatacacaggaacccaggaaatccatccctctgggctcttctc
tccagactggtcccacagtactgccccaacaaagctgatggaggtgctgtggccggcagt
gtggcatgtcaggccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaat
cagctggcctcaggccggcactctggtgaggacagaagacgcaatgctctgaaaacaatc
cagagagctgtactgctgtgtccagatgatcctgctgggtgggcggggctaatggccgcc
tgtcacacagagaacaccgcatgcttactcacaggctctgcccctcgcagagaagatctg
gagagggcgcacatgaccctggtgtctgaaaaagtgaagagcctgcaggcagaggacggg
ctcctggctcaggccctggagggatggatgctgcagcaagccgtgactggcctcaaacag
agcagccaatatgaccaggcagagactctctgctcccaggttctgagtgtttctccagag
catcctgtggtgttcttgatgttaaggcaggttcagtgtgagcacctcctgttgtctaaa
gctggtaactgtgttcctcctacggtgctggatcagctcagtgctgcggtcatggccaac
cacacatctgtgtccgcctggcattggttggcagaagtgtaccgctctcagggtctgctg
gctcaggcctctgtggcatatagacagagtcttcagctggcctctcagctcggtgaccac
tttgggaagatgagcagcctgctccgactagctctgctagcgctcatgccatgtttggct
ggtgtttgtgtctctgagtggaaggatctggtgttggaggccagcgctgaagtcttaaag
atgggcagctcaccagtagctctgctcttccaagccttactgcagttctctatgaagatg
ggtgccagggaaacccgtcgcctgttggagaagattgtttatgcttcagcctcagggagc
tctgaaacaatagtatcagtggcacgttggtacctcctgcgccacctacactccaaagat
gacctggagctgatagataccctgttggtgaaggctacagcagaaggagacagcagactg
gtggatttccacagacgcctttatccatccagctga
DBGET
integrated database retrieval system
