KEGG   Cyprinus carpio (common carp): 109076106
Entry
109076106         CDS       T05134                                 
Name
(RefSeq) nucleoporin SEH1-like
  KO
K14299  nucleoporin SEH1
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03013  Nucleocytoplasmic transport
ccar04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109076106
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    109076106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109076106
   04131 Membrane trafficking [BR:ccar04131]
    109076106
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109076106
Membrane trafficking [BR:ccar04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    109076106
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_EIPR1 WDR55 EIF3I Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 109076106
NCBI-ProteinID: XP_042596458
Ensembl: ENSCCRG00000027145
UniProt: A0A9Q9X743
LinkDB
Position
B16:complement(8653586..8657103)
AA seq 351 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSIKVWDKGGNGEWTCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAIVWEEIVGESNDKQRGQSHWVKETTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISSKLSCSCISWNPSSSRAHAP
MIAVGSDDSNVTYGGKVQIYEYNEVTRKYAKAETLMTVADAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPLQKDSSSSAPTKFEVQVLAQFDSHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGYGSQVSGQPGALSGVLGSATAQSALNGATGR
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgtttgtcgcgcgcagcattgcagccgatcataaagacctgatccacgatgtttcttat
gattttcacgggcggagaatggcgacgtgctccagcgaccaaagcattaaggtgtgggat
aagggtggtaatggagaatggacctgcacagccagctggaaaactcacagtggctcggtt
tggagagtgacctgggcccatccagagtttggacaggtgttggcgtcctgctcctttgac
cgtactgctatagtatgggaggagattgttggagagtccaatgacaaacaacgaggacaa
agccactgggttaaagaaaccacacttgtggacagtcggacatctgtgaccgacgtgaag
tttgccccgaagcacatgggcttgatgctgaccacatgttctgcagacggggtggtgcga
atctacgaggcccctgacgtgatgaacctgagccagtggtccctgcagcacgagatctca
tccaaactctcctgctcctgcatctcctggaacccttccagttcccgagctcatgcacct
atgattgcagtgggtagcgatgacagcaatgtaacgtatggcggcaaagttcagatatat
gagtataacgaagttacaaggaaatatgccaaagcagagaccctgatgacagttgcagat
gctgtacatgatattgcatttgctccaaatctgggacggtctttccatgtacttgctatt
gcaaccaaagacgtgcgcatcttcaaactggttccacttcaaaaggacagctcttcttca
gcacccactaagtttgaagtgcaggtgctggctcagtttgacagtcataactctcaggtg
tggcgggtcagctggaacatcaccagtacacttctggcttcctctggtgacgatggttgt
gtgagactctggaaagcaaactatatggacaattggaagtgcacaggtattctaaaggga
tatggtagtcaagtatctggtcagcctggtgcactgagcggcgtcctgggatctgctact
gcacagagtgctctaaatggggccactggaagatag

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