Cyprinus carpio (common carp): 109076106
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Entry
109076106 CDS
T05134
Name
(RefSeq) nucleoporin SEH1-like
KO
K14299
nucleoporin SEH1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109076106
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
109076106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109076106
04131 Membrane trafficking [BR:
ccar04131
]
109076106
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109076106
Membrane trafficking [BR:
ccar04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
109076106
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
WDR55
EIF3I
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
109076106
NCBI-ProteinID:
XP_042596458
Ensembl:
ENSCCRG00000027145
UniProt:
A0A9Q9X743
LinkDB
All DBs
Position
B16:complement(8653586..8657103)
Genome browser
AA seq
351 aa
AA seq
DB search
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSIKVWDKGGNGEWTCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAIVWEEIVGESNDKQRGQSHWVKETTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISSKLSCSCISWNPSSSRAHAP
MIAVGSDDSNVTYGGKVQIYEYNEVTRKYAKAETLMTVADAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPLQKDSSSSAPTKFEVQVLAQFDSHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGYGSQVSGQPGALSGVLGSATAQSALNGATGR
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcgcgcgcagcattgcagccgatcataaagacctgatccacgatgtttcttat
gattttcacgggcggagaatggcgacgtgctccagcgaccaaagcattaaggtgtgggat
aagggtggtaatggagaatggacctgcacagccagctggaaaactcacagtggctcggtt
tggagagtgacctgggcccatccagagtttggacaggtgttggcgtcctgctcctttgac
cgtactgctatagtatgggaggagattgttggagagtccaatgacaaacaacgaggacaa
agccactgggttaaagaaaccacacttgtggacagtcggacatctgtgaccgacgtgaag
tttgccccgaagcacatgggcttgatgctgaccacatgttctgcagacggggtggtgcga
atctacgaggcccctgacgtgatgaacctgagccagtggtccctgcagcacgagatctca
tccaaactctcctgctcctgcatctcctggaacccttccagttcccgagctcatgcacct
atgattgcagtgggtagcgatgacagcaatgtaacgtatggcggcaaagttcagatatat
gagtataacgaagttacaaggaaatatgccaaagcagagaccctgatgacagttgcagat
gctgtacatgatattgcatttgctccaaatctgggacggtctttccatgtacttgctatt
gcaaccaaagacgtgcgcatcttcaaactggttccacttcaaaaggacagctcttcttca
gcacccactaagtttgaagtgcaggtgctggctcagtttgacagtcataactctcaggtg
tggcgggtcagctggaacatcaccagtacacttctggcttcctctggtgacgatggttgt
gtgagactctggaaagcaaactatatggacaattggaagtgcacaggtattctaaaggga
tatggtagtcaagtatctggtcagcctggtgcactgagcggcgtcctgggatctgctact
gcacagagtgctctaaatggggccactggaagatag
DBGET
integrated database retrieval system