Cyprinus carpio (common carp): 109096478
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Entry
109096478 CDS
T05134
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
3.6.4.13
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04622
RIG-I-like receptor signaling pathway
ccar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109096478
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109096478
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccar04054
]
109096478
Enzymes [BR:
ccar01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
109096478
Pattern recognition receptors [BR:
ccar04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109096478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
SWI2_SNF2
SNF2-rel_dom
CARD
DUF3638
DUF3456
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
109096478
NCBI-ProteinID:
XP_018965626
LinkDB
All DBs
Position
18:complement(20516042..20560141)
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AA seq
1082 aa
AA seq
DB search
MSCDKDAETRHTLDCFRDRLKRLIQVEPLLDLLHFLEPDRKDRIKAKFREEGNISAATLL
IDEIIHSKNCEQGWSRELVTALETVGCKHAAKYVLNSPPEPTEEAENDSCVRLIDLLQLT
LVNMKTADVCAHCRVMGLLTQEDQENILKLIENQGNIGGARLLLKRLVKNEAGWFSKFLQ
ALEDTEHHELVRELRGEPCNEDEAMSVETVEEGEQSCSSATVETNMYSSMSLPPPVLSAN
SSLLSEDLDSSVDSSGLGACADNEEVDMYKEGEEEDLTEDDNPSEEDKRDIVLRDYQMEV
ARPALEEKNIIICLPTGSGKTRVAVYITKEHLEKRKQMGQPGKVVVLVNKVPLVEQHYKA
EFGRFLKHQYSVERVSGASQLKISFPQIIEQNDIIICTAQILENSLAKAKNGDEDGIKLS
QFTLMVIDECHHTKKGGVYNHIMIRYLKQKHQNQLLKKQDKSPVPLPQILGLTASPGVGG
AMSQQRAEEHILQICANLDAFTIKTKTFEEEEAKTPFKRIARAEERKEDPFGDVIKKIMD
EIHEHADLKPLCEPGIQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYNEALHQSNTIRM
SDAFRFLDKYHNEELKTKSIADEEGTVTITDTERFLFTLFKDNKAKLQELMGKPQYENNS
LAQLKTSILKEFSTRERARGIIFTRTRLSAIALCQWIQENPKFDEVGVSAPAVVEEEQRT
VSYTRGGGGEESKLITVRENASLQERLLDYETNGVIACKNCGQQWGSMMLYKSIECPCLH
IKNFVVTYGSKKKTFSKWSELPIKFPAFDYTQHADLLGCNKVCVALVGALVVITLIAIPT
AIYYHAEVSVINMNDVRRAVFPSLQARGRGRAEDSSYTLVAEAGSGVAERESVNEYREKM
MSKAIAKVCKMNRADYEKKIREFQMQAIMEEKVKIKKKQQKGMMKEPPSKISLSCRQCSV
FVCSGEDIEKIENMHHVNVTTQFSKLITVRENASLQERLLDYETNGVIACKNCGQQWGSM
MLYKSIECPCLHIKNFVVTYGSKKKTFSKWSELPIKFPAFDYTQHADLLVEDSGEEEDME
TD
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgagctgcgataaggacgcagagacgcgtcacactctggactgtttcagagacagactg
aagcgactcattcaggtcgagccacttctggatctgttgcatttcctcgaaccggatcga
aaggaccggattaaagccaagtttcgtgaggaggggaacataagcgccgcgacacttctg
attgacgagattattcactctaaaaactgcgagcagggatggtcgagagagctggtcacc
gcgctggagaccgtcgggtgcaaacacgccgcgaagtacgtgttgaacagcccaccggag
cccacagaggaggcagagaacgacagctgcgtccggctgatcgacctcctgcagctcacg
ctggtcaacatgaagaccgcagacgtgtgcgcgcactgccgcgtgatggggctcctgacg
caggaggaccaggagaatattctgaaactcatagagaatcaagggaacataggtggcgct
cggctgctcctcaaaaggctggtgaaaaatgaagctggctggttttccaaattccttcag
gctctggaggacacggagcaccacgagctggtgcgcgagctgcggggagagccgtgtaat
gaggacgaggccatgtcagtcgagactgttgaggagggtgaacagtcatgctcatctgcc
acagtggagactaacatgtacagctctatgtcacttccccctcccgttctctcagcgaat
agctcgcttctgtcagaggatctggacagcagtgtggacagcagcggtctgggtgcatgt
gctgacaatgaagaggtcgacatgtacaaagaaggtgaggaggaagatctcacagaggat
gataatccatcagaggaagacaagagagatattgtactgcgtgactatcagatggaggtg
gcgagaccagctctggaggaaaagaacatcatcatctgcctccctacaggaagcgggaaa
accagagttgctgtgtatatcactaaggaacatttggagaagaggaagcagatgggacaa
ccggggaaagttgttgttttggtcaacaaggttcccctggtcgagcagcactacaaggcc
gagtttgggcggtttctgaagcaccagtactcagtggagcgggtcagtggagcctcgcag
ctcaaaatctccttcccacaaatcatcgagcaaaatgacatcatcatctgcacagcacag
attctggaaaactctttggccaaagccaagaacggcgacgaggacgggatcaaattatca
cagttcactctgatggttattgatgaatgccatcacacgaagaagggcggtgtgtataac
cacattatgattcgctacctgaaacaaaaacatcagaaccagctcctgaagaagcaggac
aagagtcccgttccgctccctcagattctgggtctgacggcctcacctggtgtgggagga
gccatgagccagcagagagcggaggaacacattctccagatctgcgcaaacttggatgcc
tttactataaaaacaaagacttttgaagaagaggaggccaaaacaccattcaaaaggatt
gcaagagcagaagagaggaaggaggacccgtttggagatgtgatcaagaagataatggat
gaaatccacgagcatgctgacctgaagcccctctgtgagcccggtatacaaaattacgaa
cagtgggttgtacagaaagagcagaacgctgctaaggaggagaatcagaaggtgcgcgtg
tgcgccgaacatctccgccaatacaacgaggctcttcatcagagcaacaccatacgcatg
tcagacgccttccgcttcctcgacaaatatcacaacgaagagctcaagaccaaatccatc
gccgatgaggaaggcactgttacaatcacagacacagagcgattcctcttcactttgttc
aaagacaataaagcaaagctgcaggagttgatgggaaagccgcagtatgaaaacaacagt
ctggcccagctgaaaaccagcatcctgaaggaattcagcaccagagagagagcgagaggc
atcatattcacccggacccgcctcagcgccatcgctctctgccagtggattcaagaaaac
cccaagtttgatgaagtgggagtcagtgccccggccgtggtcgaggaagagcagaggaca
gttagttacacgcgtggtggcggaggcgaggagtctaagctgattacagtccgagagaat
gcttcactacaggagagactcctggactatgagaccaatggagtcattgcgtgcaaaaac
tgtggacagcagtggggctcaatgatgctgtataagagcattgagtgtccctgcctccat
atcaagaactttgtggtcacgtacggctccaaaaagaagacattcagcaaatggagcgag
ttgcccataaagttccctgcgtttgattacactcaacacgctgatctccttggctgtaac
aaggtgtgcgtggcgctggtcggggcgcttgtcgtcatcacgctcatcgctattcccacg
gcaatttactatcatgctgaagtatctgtgatcaacatgaatgatgtaagaagagctgtt
tttccctctctgcaggcccgtggtcgaggaagagcagaggacagtagttacacgctggtg
gcggaggcaggatctggggtggcagagagagagagcgttaacgaataccgggagaaaatg
atgagcaaagccatcgccaaagtgtgcaagatgaatcgagccgactacgagaagaaaatc
agagagtttcagatgcaggccataatggaggagaaggtgaagataaagaagaaacagcag
aaaggaatgatgaaggaaccgccatctaaaatcagcctgagctgcagacagtgcagtgtg
tttgtgtgctctggagaagacattgagaagatcgagaacatgcaccatgtcaatgtcact
acgcaatttagtaagctgattacagtccgagagaatgcttcactacaggagagactcctg
gactatgagaccaatggagtcattgcgtgcaaaaactgtggacagcagtggggctcaatg
atgctgtataagagcattgagtgtccctgcctccatatcaagaactttgtggtcacgtac
ggctccaaaaagaagacattcagcaaatggagcgagttgcccataaagttccctgcgttt
gattacactcaacacgctgatctccttgtagaggactcgggggaagaagaagacatggaa
actgactaa
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integrated database retrieval system