Cynara cardunculus var. scolymus (artichoke): 112502190
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Entry
112502190 CDS
T05604
Name
(RefSeq) serine/arginine-rich splicing factor SR45a isoform X1
KO
K12897
transformer-2 protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112502190
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112502190
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112502190
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112502190
Spliceosome [BR:
ccav03041
]
Common components
Common spliceosomal components
SR proteins
112502190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CoV_nucleocap
RRM_5
RRM_occluded
RRM_10
Motif
Other DBs
NCBI-GeneID:
112502190
NCBI-ProteinID:
XP_024961809
LinkDB
All DBs
Position
LG 1:complement(17231860..17237361)
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AA seq
262 aa
AA seq
DB search
MADSPRRRYSRSPLYEAPSRSRSRSRSRSRSRSWSRSRGRPVSRSRSRSRGREEAINPGN
TLYVTGLSTRVTQDQLEEHFSKEGKVANCFLVVEPRSRISRGFAFITMETLEDANRCIKH
LNQSVLEHRQITVERSRRKRPRTPTPGHYLGLKNTRDTGYRGDRGRYRGGSGRDDYGYRR
SPRRSPPPYRGGRNYSPPRRSPPPYRGGRDYSPPRRSPPPYRGGRDYSPRRSPYYGGRSR
RERTRSPPYSPYRSPERHYGRR
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggctgactcgcctcgaagaaggtattcacgctcccctctgtatgaagcaccatccagg
tccaggtccaggtccaggtctcgatctagatcaagatcctggtcaaggtcaagaggcagg
cctgtatcgagatcaagatcaagaagtcgtggcagggaagaggcaataaatcctggaaat
acactttacgtcactggtctatctacacgtgttacacaggaccagcttgaagaacatttt
tcaaaagagggaaaggtggctaactgttttctggttgtggaacctcgttcacgcatctcc
cgtggctttgcttttatcactatggaaactcttgaggatgctaatcgctgcataaaacat
cttaatcagtcggttcttgaacatcgccagataactgtggagagatcgcgaaggaaacgc
ccaagaacacccacacctggtcattacctaggcctgaaaaacactcgggacactggctat
cggggtgatagagggaggtatcgtggtgggtctggacgtgatgactatggataccggagg
tctccacggcggtcaccgccaccatatagaggtggtcgtaattactctcctccaaggagg
tccccaccaccatatagaggtggtcgtgattactctcctccaaggaggtccccaccacca
tatagaggcggccgtgattactctcctaggcgctcaccttattacggagggagatcaagg
agggagcgaacaaggtctcctccatattctccttacaggagtcctgaaaggcactatggt
cgtcgttag
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integrated database retrieval system
