Cynara cardunculus var. scolymus (artichoke): 112509663
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Entry
112509663 CDS
T05604
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112509663
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112509663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112509663
04121 Ubiquitin system [BR:
ccav04121
]
112509663
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112509663
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112509663
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19 complex
112509663
Complex C
Prp19-CDC5 complex
112509663
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
U-box type E3
112509663
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
112509663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_WDR41
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_Aladin
U-box
Beta-prop_DCAF4
Beta-prop_EIPR1
RMC1_N
PROPPIN
Beta-prop_SPT8
KNTC1_N
WD40_like
zf-Nse
Beta-prop_ACSF4
WDR54
B_lectin
PAS_11
Motif
Other DBs
NCBI-GeneID:
112509663
NCBI-ProteinID:
XP_024970511
LinkDB
All DBs
Position
LG 1:38046320..38055640
Genome browser
AA seq
521 aa
AA seq
DB search
MICSISGEVPDEPVVSKSSGLLFDKRLIERHILDHGKCPVTGNSLTMDDLIPIKTGKIVK
PRQVQAASIPGMLGMFQNEWDALVLSAFASEQQLHTTRQELSHCLYQHDSACRVIARLKK
ELDEARTMLAHLERQAPMPASMVMSANAAAAINGKRAAEGDELDTDGKKIRPGISAGIIA
ELTDCNAALSQQRKKRQISSSLAPVDAVERYTQLNSYPLHKTNKAGILSIDVHQSKGIIA
TGGVDTNAVVFNQTSGEILSTLSGHSKRVTSVKFVADGELVVTGSADKTVRVWQGSEDGN
YDCRHVLKDHTAEVQAVTVHATNSYFVTASLDNTWCFYELSSGLCLAQVADLSASEGYTS
AAFHPDGLILGTGTAGSLVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAQDGV
RLWDLRKLRNFRSFTPYENTPTQSVEFDHSGSYLALGGSDIRVYQVANVKSEWNCIQTFP
DLSGTGKINSVKFGPDAKYIAVGSMDRNLRLFGLPEEATES
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgatttgttcgatctccggcgaggtaccggacgaacctgttgtttctaagtcgtctgga
ttactcttcgacaagcgtttgattgagagacacatattggatcatggaaaatgccctgtt
actgggaattcattaactatggatgaccttattccaataaaaactggaaagatagtgaag
cctagacaagtacaggctgcaagtatccctgggatgcttggaatgttccagaatgaatgg
gatgctttggtgctatctgcttttgcatccgagcaacaactacatacaacaaggcaggag
cttagtcattgtttataccagcacgactcagcttgccgtgtaattgcaagattaaagaaa
gaactagatgaggccaggactatgctggcacatttagagaggcaagcacccatgccggca
tcaatggtaatgtcagcaaatgcggccgctgcaatcaatgggaaaagagctgctgagggt
gatgagttggatacagatggtaagaaaatccgcccaggaatctcagctggtataattgca
gagttaacggactgcaatgctgcactttcacagcaaaggaaaaagagacagatttcatcc
tcattggctcccgtggatgctgttgagaggtatacccagcttaatagttatcctcttcac
aaaacaaacaaagctggcatattatctattgatgtccatcaatcgaagggtattattgct
actggtggagttgatacaaatgcagtagtcttcaatcaaacctcaggggagatattatcg
acccttagtggtcattcaaagagggtcactagtgtcaaatttgttgctgacggtgagttg
gttgttaccggttctgctgataagacagttcgtgtgtggcaagggtctgaagatggaaac
tatgattgtaggcatgtcttaaaggatcataccgctgaggtacaagctgtgactgtccat
gctaccaatagctattttgttacagcttctctcgacaatacatggtgcttttatgagcta
tcttctggtctatgtcttgcacaggttgcagatttgtctgcatctgagggatatacatct
gcagcttttcatcctgatggtctcattcttggaacaggcacggccgggtctcttgtaaaa
atctgggatgtaaagagtcaggcaaatgttgcaagatttgacgggcatgttggagccgta
accgcaatatctttttcagagaacggctactttttagctactgctgctcaagatggtgtt
agattgtgggatcttcgcaagcttagaaatttcaggagctttacaccttatgagaacaca
ccgacacaatccgttgaattcgaccatagtggaagttaccttgcattaggaggctcagac
ataagggtttatcaagtggcaaatgtgaagtctgaatggaactgtatccaaacattccca
gatttgtcaggcacaggtaagataaactctgtaaaatttggaccagatgcaaaatacata
gcggttgggtcaatggacaggaaccttcggctgtttgggctgcctgaagaagcaacggag
tcttag
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integrated database retrieval system
