Cynara cardunculus var. scolymus (artichoke): 112510173
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Entry
112510173 CDS
T05604
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112510173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112510173
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
112510173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_17
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_8
TPR_14
TPR_6
TPR_9
TPR_19
ARM_TT21_C
TPR_15
DUF7017
Motif
Other DBs
NCBI-GeneID:
112510173
NCBI-ProteinID:
XP_024971262
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All DBs
Position
LG 3:complement(716698..730959)
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AA seq
1167 aa
AA seq
DB search
MEEEKGGQEDSVFTQLTEAVAANSEDPSLHFNLGLFLWKGIGEESKEKAAEHFVIAAKLN
PQDANAFRYLGHYYSRVDTQRALKCYQRALNLAPQDSESGESMCDLLDKEGKESLEVAVC
REASGKSPRAFWAFRRLGFLQVHQKKWSEAVHNLQQAIRGYPTSADLWEALGLAYQRLSM
FTAAIKSYGRAIELEESRVFALVESGYVFLMLGSHRKGAEHFQQALQISPENVAAHYGLG
CALLELSKECISSGAFRWGASILEEASKVAKTGTCLAKNVSCMWKLHGDIQLTYAKCFPW
MDENPILETDKKALTASILSWKNTCSSAALSARHSYQQALHLAPWQANIYTDIAVTIDVI
NSFKEEEKHDSIQRELPEKMILGGLLLESSNNEFWVALGCLSHRVELKQHAFIRSLQLDV
SLAVAWAYLGKLYRKQGENKLAQHAFDRARSIDPSLALPWAGMSADMSIRALKPDEAYDC
CLRAVQILPLPEFQMGLAKLALLSGQLSSSEVFGPIRQALHRAPQYPESHNLLGLVCEAR
HDYQSATTSYRLARCAMNTSFGDTTKLLDISINLARSLCKGGKAYEAVEECEELKKTGLL
DWEGLHMYALSLWQLGKNDQALSVIRILAARVKSLEPRLASTSISFICRLLYYIHGREAV
MTTILKMPKDLFNSSKASFVVSAIHTLDQSNQLEAVVSSSRSSLLTHDEITGMHFLIALS
KLVKNGSEHRLGFQSGIDHLKKNLHKYPNSYLLRNVLGYLLISSNERKDTHLSTRCFTVR
SSPSECPKEEGLMSAPEILGASVVACYSTGNFNDKYSFSTCKDQSPHRHGSLKLLQKWCH
QEPWNKNARYLLILNYFQKAHEERYHQHICLGLKRLIGAALSDESRHYQKFQLLLCASEI
SLQSGDHIGCINHAKNASKLSVLDGYLFFAHLLLCRAYAAENNRVLLREEYMRCLDLRTD
YHIGLICLKYIECQYELQTDESIIELRFEECSKDIKYSRNAWMAILKFVQGLIAVWDGNF
LGAEEFFAHACSLNDSESCLFLCHGAICMELARQECNSDYLLLAVGSLKKARYISRAPLP
ILQLLLAQAEASLGYKAQWEQYLKFEWLSWPPEMRPSEMFLQMHLISRESHDAIYASSRM
KNPLRWILQAIHMNPSCSRYWKVLQNS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaaagggcggtcaagaagactctgttttcacacagttaaccgaagctgtt
gccgccaactctgaagacccttccctccatttcaatcttggtttgttcctgtggaagggg
attggagaagaatctaaggaaaaggcggcagagcattttgtgattgcagcaaaactcaac
ccacaagatgcaaatgcttttaggtatttgggccattactatagcagagttgatactcag
agagctctcaagtgttatcagagagctctcaatctcgctcctcaagattctgaatctggg
gagtcgatgtgtgatttgttggacaaagaaggaaaagagagcttggaggttgctgtctgt
cgtgaagcttcagggaagtcgccaagggccttttgggcatttcgtagactaggttttcta
caggtccatcagaagaagtggtctgaagcagttcacaatcttcagcaggccatcagagga
tatcctacatctgctgatttatgggaagccttaggtcttgcctatcagcgattaagcatg
ttcacagctgccattaagtcatatggtcgagctatagagttggaggaatcacgagtattt
gcattggttgagagtggatatgtcttcttgatgcttggttcacatcgaaagggagctgag
cattttcagcaagctttacagatatcacctgaaaatgtagccgcacactatggacttggg
tgtgcgcttcttgaattatcaaaggaatgtataagctcaggtgcattcagatggggagct
tcaatattagaggaggcgtcaaaagttgcaaaaactggtacatgcttggcgaaaaatgtt
tcatgcatgtggaagttgcacggtgatattcagcttacatatgcaaagtgtttcccgtgg
atggatgaaaaccccatcttagaaacagataagaaagctttgactgcttccatcctttca
tggaaaaacacctgctcttcagctgcactgagtgccaggcattcctatcaacaggcactg
catttggctccatggcaagccaacatctacacagatattgctgtcacaatagatgtaata
aactcttttaaggaggaggagaaacatgattctatccaaagggaactacctgagaaaatg
attttagggggattattactcgagagttccaacaatgagttctgggttgcattaggatgc
ttatcccatcgtgtggaattgaaacaacatgcttttatcaggtcactgcagttggatgtg
tcattagctgttgcatgggcatatcttgggaagctctacagaaaacagggtgaaaataaa
ttggcccagcacgcatttgatcgtgccaggagtattgatccttcacttgcattaccgtgg
gcaggcatgtcagcagatatgtctattagggcgctcaagccagatgaagcttatgattgc
tgtttacgggctgtgcagatactaccacttccagaatttcagatgggtcttgcaaagctt
gctctgctttctggtcaactttcatcgtcagaggtatttggacccatacgtcaggccttg
catcgtgcaccccaatatcctgaatctcacaatcttctagggcttgtttgtgaggcaaga
catgattatcagtctgctaccacctcgtataggttagcacgttgtgcaatgaacacttct
tttggtgacactacaaaactccttgatatatcaattaatttggcaaggtcgctctgtaag
ggaggcaaagcttacgaggcagtggaggaatgtgaagaattaaagaagacagggcttctg
gactgggaaggtttacatatgtatgctctatcattatggcaacttggcaagaatgatcag
gctttgtctgtgattaggattctagctgcacgtgttaaatcattggaaccaagattggca
tccacctccataagcttcatatgtagattgctttactacattcatgggcgggaagcagtg
atgacgaccatactgaaaatgcctaaggatttatttaatagttcaaaagctagttttgtg
gtatctgccatccatactttggatcaaagcaatcagcttgaggcagttgtctcaagtagt
cgctcttccctcctaactcatgatgaaattacaggaatgcattttctgatagcactaagc
aaattggtaaaaaatggttcagagcatcgcctgggatttcagagtggaatagatcacctt
aaaaaaaatctccacaagtatcctaacagttatttgctaaggaatgttcttggttatctc
ctaatatctagtaatgaacggaaagatacgcacttatcaactagatgctttactgtgaga
agcagcccttcggaatgtcccaaggaagaaggtttaatgagtgcacctgagatccttggt
gcgagtgtcgttgcttgctacagcactgggaatttcaacgataaatactctttctctacc
tgtaaagaccaatcgccacatagacatgggtcgctcaaactattgcaaaagtggtgtcat
caagaaccatggaacaaaaacgcacgataccttctaattctcaactattttcagaaggca
catgaagagagataccatcaacatatatgtttgggactaaaaaggctaattggtgcggct
ctttcagatgaatctcgtcactatcaaaagttccagcttttactttgtgcttccgagata
agtttgcaaagtggcgaccacattggctgcataaatcacgctaaaaatgcttcaaagctt
tctgttctcgatgggtatctcttctttgcccatttgctactatgccgtgcctacgctgca
gaaaataatcgagtcctgttacgtgaagagtatatgagatgcttggatttgagaaccgat
tatcatatcggtttgatttgccttaaatatattgaatgtcaatacgagctacagacagat
gaaagtataattgaattgaggtttgaagaatgttctaaggatataaagtattcaaggaat
gcatggatggctatattgaaatttgtccagggactgattgctgtttgggatgggaatttt
cttggtgcggaagagtttttcgctcatgcatgttcgttaaacgattccgaaagttgtctg
tttttgtgccacggtgccatctgtatggaactcgcgagacaggaatgcaactcggactac
ttgctgctggcggtggggagtctgaagaaagctagatacattagccgtgcccctttacct
atcctgcaattgctactagcacaagcggaagcaagccttggatacaaagcgcaatgggag
cagtaccttaagtttgaatggttatcttggcctccagagatgaggccgagcgagatgttt
cttcagatgcatttgatttcaagagaatcgcacgatgctatctacgcttcatcaagaatg
aaaaatcctttgagatggattcttcaagcgatacatatgaatccttcgtgttcgagatat
tggaaagttttgcaaaattcgtaa
DBGET
integrated database retrieval system
