Cynara cardunculus var. scolymus (artichoke): 112511333
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Entry
112511333 CDS
T05604
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112511333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112511333
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112511333
Complex B
112511333
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
112511333
NCBI-ProteinID:
XP_024972686
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All DBs
Position
LG 4:complement(1689868..1716866)
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AA seq
998 aa
AA seq
DB search
MDNNPQNPGSQSLRPPAIGSIGSQSFGTNFSMQFRPVVPAQQGQPFMQSASGTQQYRAVG
QGMPGQTQLPQFSQPMQMSSRPGQPGHPSPSSQAMPMPYMQPNMTFTSSSPQFQNSATTN
SHVPSLGGPGVPLSSSYTFTAPSFGQPQNATNVSSQFHTVSQMHTPGASTGGQPWLSSGN
QGPLTVSSVPQTGQQPSTTTPTNQQASNVSNTSQDASSDWQEYTAGDGRRYYYNKRTKQS
SWEKPLELMTPLERADASTVWKEFTTAEGKKYYYNKDTKQSKWTIPEELKLAREEAEKEA
SRGTQSEMATNPNASAVLTPSALDRPSASASSVNDVSSTAPRVASSPVAVAPVIPVGNVP
PNVGSESSSTAAGERVTAVPLIPAVGGASMVSPMTSTENSSSHGVPKAVEVSAQDTEEAK
KGMAVAGKVNTTQLEEKAVDDEPFIYASKQEAKIAFKSLLEDANVEADWNWEQAMRVIIN
DKRYGALKTLGERKQAFNEYLMQRKKLEAEERRLRQRKAKEEFTKMLEESKELTSSMRWS
KAMAMFEDDERYKAVERPSDREDLFQNYLVDLQKKERAKAQEEQRQYRLEYRQFLESCGL
IKVDTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEKEEDEQRKIKKEHIKRVERK
NRDEFRKMMEEHVISGALTAKTQWRDYCQKVKESVAYQAVASNTSGSTPKDLFEDVTEEL
EKKYHEDKTRVKDAMKLKKVTVAPTWTLEDFKVAIEEDIISSLSDVSLQLVFEDLLERAK
EKEEKEAKKRQRLAKDFTELLYDIKEITASSTWEECQQLFEESSEYRAVGDESLARETFE
EYVARLLEKAKEKERKREEEKARKEEKERRKEKERREKEKEREEREREKDKKKDDSDIEN
LEIKEEKKREKEKDRKHRKRHQSSIVTDDVSSDKDEREDSGKKSRRHGSERKKSRKHAYS
PESDSESKHKKHKRDSRKNGGGHEELEDGELGEDGEIQ
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggataataaccctcagaatcctggttcacagtctctgcggccacctgcaattggatcc
attggatctcaaagttttggaacaaacttttcaatgcaattccggcctgttgttccagca
caacaaggacaaccattcatgcagtcagcttcaggcacccagcaatatcgtgcagtggga
caaggcatgcctggtcaaactcagctgccacagttttcacagccgatgcagatgtcttca
aggccaggtcagcctggccacccttctccatcatcacaagcaatgcccatgccttatatg
cagccaaacatgactttcacatctagttcaccacagtttcagaactctgccactacaaac
agtcatgtgcctagtttgggtggccctggagtacctctatcttcttcttatactttcact
gcaccgtcatttgggcagccacaaaatgcaacaaatgtgtcatctcagtttcatactgtg
tcacagatgcacacacctggtgcctcaacaggaggacaaccttggctgtcttctggaaat
caaggtccactaactgtttcatcggtgccgcaaactggacaacagccttcaacaaccact
cccacaaatcagcaggcatcaaatgtttccaatactagtcaagatgcatcatctgattgg
caggagtatacagctggtgatggaagaagatattattacaacaagagaacaaaacaatct
tcctgggagaagcctttggagttgatgacccctctggagagggctgatgcctccactgtt
tggaaagagttcacaactgcagagggtaaaaaatattattataacaaggatacaaagcaa
tctaaatggacaatacctgaggaattgaagttggctcgtgaggaggctgagaaagaagct
tctagagggactcaatctgagatggcgactaatcccaatgcttcagccgttttaacaccc
tctgcacttgatcgaccttcagcttctgccagctcagttaatgacgtttcttcaacagca
cccagagtagcttcaagccctgtagcagttgcacctgttattcctgtcggcaatgttccc
cctaatgtggggtctgaatcatcatctactgctgctggagaaagagtcactgcggtccct
cttattccagcggttggtggtgcttctatggtttctccaatgaccagcacagagaattca
tcttcacatggtgttcccaaagctgtggaagtgtctgcacaagacactgaggaagcaaag
aagggaatggcagttgctggaaaagtgaacacgacacaattagaggagaaggctgtggat
gatgaacctttcatatatgcgagtaagcaggaggcaaaaattgcgtttaaatccttattg
gaggatgcaaatgttgaggctgattggaactgggagcaggcaatgagagtgatcataaat
gataaaagatatggtgcattgaaaacacttggcgaaaggaaacaggcattcaatgagtac
ctgatgcaaagaaagaaattggaggctgaagagaggcgcttgaggcagagaaaagcaaaa
gaagagttcacaaagatgttagaggagtccaaggaattgacatcatccatgagatggagc
aaagctatggcaatgtttgaagacgatgagcggtataaggctgtggaacgaccttctgac
cgagaagatctttttcagaactatctggttgatctacagaagaaagagagggcaaaagct
caagaggagcaacggcagtacagattagagtacagacaatttttggaatcttgtggcttg
atcaaggtggatactcagtggcggaaagttcaagatcggttggaagatgatgaaagatgt
tcacggcttgaaaaaattgatcgtttggagattttccaggaatatatccgtgacctggag
aaggaagaggacgaacagaggaaaattaaaaaggaacatataaaaagggtggagcgcaaa
aaccgcgatgaattccggaagatgatggaagaacatgtaatttctggcgcacttacagca
aaaactcaatggcgagactattgtcagaaggtcaaggagtccgtagcttatcaggctgtt
gcttcaaatacttctggctcgactccaaaagatctgtttgaggatgttactgaagagttg
gagaaaaagtatcatgaagataaaacgcgtgtgaaagatgctatgaaattgaagaaggtc
actgttgcgccgacatggacacttgaagatttcaaggttgctattgaggaggacatcatc
tcatctttatccgatgttagtctgcagcttgtgtttgaagacctacttgagagggccaag
gagaaagaagagaaggaagctaaaaagcgtcagcgtcttgccaaagatttcactgagtta
ttgtatgacatcaaggaaattactgcctcttccacatgggaggaatgccagcaactcttt
gaggaaagctccgaatacagagctgttggtgatgagagccttgctcgtgagacctttgag
gaatatgttgctcgtttgctggagaaggcaaaagagaaagaacggaagcgggaggaggag
aaggcgagaaaggaggaaaaagagaggagaaaggagaaagaacggagggagaaggagaaa
gagagagaggagcgtgaaagagagaaagataaaaagaaggatgattcagatatcgagaat
ttggagattaaggaggagaagaaaagagagaaagaaaaagacagaaaacatcggaagcgg
catcaaagcagcatagtgacggacgatgtgagttctgataaggatgaaagagaagactct
ggtaagaagtctcgtagacatggcagtgagcgcaaaaagtcaagaaagcatgcatattca
cctgaatcagatagtgaaagcaagcataaaaaacacaagagagattctcgtaaaaatggt
ggtggtcatgaggagctggaagatggggagcttggcgaggatggggaaatccaataa
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