Cynara cardunculus var. scolymus (artichoke): 112513054
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Entry
112513054 CDS
T05604
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112513054
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112513054
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112513054
NCBI-ProteinID:
XP_024974944
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All DBs
Position
LG 5:complement(35859527..35862594)
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AA seq
394 aa
AA seq
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MEMAKFKSVLVVCFIFATIIVADSNHTINSRRGLRKKHEGPCVAHNRIDKCWRCDPKWAD
NRQKIAECVEGFGHNTTGGKAGKIYIVTDPSDKDMVNPTPGTLRHAVLLPEPVWIIFNSH
MHIKLMEELIFASDKTIDGRGQEVHITGGAGFMLQFIHNVIILDIHMYDIVPGKGGNIRS
AADHVGIRGASDGDAISIFGSTDIWVDHCSFAGTFDGLIDIVARSTNITISNCHFVRHDK
ALLFGASDVQPDDNMFVTLAYNHFGKGLTQRLPAVRWGFVHVVNNDYTQWKSYAIGGAKG
ATIISQGNRFVAEDGAAKEITYRKQAPEEEWSKWTWRSEGDLMQNGAFFVNSGDPNWAAS
YKGYPLLPAEPAENVALLTKVAGAALGCKVGQPC
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggagatggctaaattcaagtcggtgttggtcgtatgtttcatttttgcgacaattatc
gtggccgattccaatcataccatcaacagcaggagggggctgaggaagaaacacgaaggg
ccgtgcgtcgcccataaccgtatcgacaaatgctggcgatgcgacccgaaatgggcagat
aaccgccaaaagatcgccgaatgcgttgaaggcttcggtcacaacaccaccggtggaaaa
gccggaaaaatctacatcgtcaccgacccatcggacaaagacatggtaaacccgactccg
ggaaccctccgccatgccgtcctcctccccgaacccgtttggatcattttcaactcccat
atgcacatcaaactcatggaggaactcattttcgctagcgataaaaccatcgacggccgt
ggtcaagaagtccacatcaccggcggtgccggattcatgttgcagttcattcataacgtc
attatcctcgatattcatatgtacgatattgtgccggggaagggtggaaatatcagatcg
gcagctgatcatgtcggaatacgaggagcaagcgacggagatgccattagcatatttggt
agcactgatatttgggtcgaccattgctcgttcgccggcacattcgatggacttatcgat
atcgtcgcccgatccaccaatatcaccatttctaattgccatttcgtcagacacgataag
gcgttgctatttggtgcaagtgatgttcaaccagatgataacatgttcgtcacactcgca
tacaaccatttcggaaaaggacttacacagcgattaccggcggtgcgatggggattcgtt
cacgtcgtcaacaacgattacacacagtggaagagctacgcgatcggaggtgccaagggc
gccaccatcatcagccagggcaaccgattcgtcgcagaagacggtgctgccaaggaaata
acctacagaaagcaagcaccagaagaagaatggtcgaaatggacatggagatcggaagga
gatctgatgcaaaacggagctttctttgttaattcaggagatcctaattgggctgcatca
tataaaggttatccattgcttccggcggaaccagctgagaatgtcgcgcttctaacaaaa
gttgccggtgctgctcttggatgcaaagtaggacaaccgtgctaa
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