Cynara cardunculus var. scolymus (artichoke): 112514543
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Entry
112514543 CDS
T05604
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112514543
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112514543
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
112514543
NCBI-ProteinID:
XP_024976843
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Position
LG 1:complement(31799545..31804481)
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AA seq
450 aa
AA seq
DB search
MAMVVVKKSVIGCSFLFLVSLLVFVAVAGAAQNEDNSNPRDVEEDQFHGLNISSFAARAK
ESQALNENAVQDPEEVVSMVEMSMRNSTERRKLGYFSCGTGNPIDDCWRCDPNWQRNRKR
LADCGIGFGRNAIGGRXGRFYVVTDSXDXDXVNPRPGTLRHAVIQDAPLWIVFKRDMVIQ
LKQELIMNSFKTIDARGVNVHIANGACLTIQFITNVIVHGLHIHDCKPTGNALVRSSPSH
YGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVLGSTAITISNNYFTHHNEVMLL
GHSDSYMRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTI
NSQGNRYLAPVNPFAKEVTKRVDTAASQWHGWNWRSEGDLLLNGAYFTPSGAGASASYAR
ASSLGAKSSSMVGTITSGAGVLGCRRGRQC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggtggtggttaaaaaatcggtgattggatgttcgtttctgtttctggtttcg
ttgcttgtgtttgtcgccgtcgccggtgcagctcagaacgaggacaactcgaatcctagg
gatgttgaagaagatcagtttcacggcttgaatatttcatcatttgcagctagagcaaag
gagtctcaagctttgaatgaaaatgcagttcaagatcctgaggaggtggtctccatggtt
gaaatgagcatgagaaacagcactgaaagaaggaaactaggatacttctcgtgtggaacc
ggtaatcccattgatgattgctggcggtgtgacccaaactggcagcgcaaccgmaagcgy
cttgcygaytgtggyattggttttggycgkaatgccatyggaggccgtgawggwcgkttt
tacgtkgtsackgaytccrgrgaykacgayscygtkaacccacgaccyggcacmctwcgk
caygckgtcatmcaagatgctcckttgtggattgtgttcaarcgwgacatggtgatccar
ttgaagcaagaacttatcatgaacagttttaagaccatcgatgctcggggagtcaacgtc
cacattgctaacggagcttgccttaccatccagttcatcaccaacgtcattgttcatggt
ttgcacatccatgactgtaaacccactgggaatgccttggtgagaagctcaccttcccat
tatggttggaggacaatggctgatggtgatgccatctccatctttgggtcgagccatata
tggatcgatcacaattctttgtccaactgtgctgatggactcgttgatgccgtcttgggc
tcgaccgccatcaccatttccaataattacttcactcaccacaacgaggtgatgctgttg
ggccatagcgactcgtatatgagggacaagcaaatgcaagtgactatcgcctacaaccat
tttggagaaggtcttattcaaagaatgccaagatgtagacatggatatttccatgtggtg
aacaatgactacactcactgggagatgtatgccattggtggaagtgcaagccccaccatc
aacagccaaggcaacagataccttgcccctgtcaatccttttgccaaagaggttacaaag
agggtggatacagctgcaagccaatggcatggttggaactggagatcagagggtgattta
cttcttaatggggcttatttcaccccatctggtgctggagcctccgcaagttatgccagg
gcttctagtttaggtgccaagtcatcttccatggttggcaccatcacatccggtgctggt
gtcctcggctgtcgtagaggccgccagtgctag
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