KEGG   Cynara cardunculus var. scolymus (artichoke): 112520695
Entry
112520695         CDS       T05604                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112520695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112520695
   03036 Chromosome and associated proteins [BR:ccav03036]
    112520695
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112520695
 Complex B
    112520695
 Complex C
   U2 SnRNP specific factors
    112520695
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    112520695
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_MROH2B_C TPR_DNAAF5 HEAT_EF3_N TPR_IPO5 HEAT_2 HEAT_ECM29 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 112520695
NCBI-ProteinID: XP_024984930
LinkDB
Position
LG 11:complement(839156..845456)
AA seq 1267 aa
MDPVDAEIAKTQEERKIMEAALAPNSITFDTELYDGNNRFQDYNREIPANDEEENVDAMD
NEVARKLASYTAPRSLLNDMPRGGDDESLGFKKSQRIIDREDDYRRRRLNQVISPERHDA
FANGDKTPKPETRTYADVMREAALKREKEETLKAIARKKKEEEENKAAGKGRETVAAQPA
QKRRNRWDQSQDDSGAKKAKTGSDWDMPDSTPGIGRWDATPTPGRVGDATPSLSRKNRWD
ETPTPGRLADSDATPAGGGVTPGATPAGMTWDATPKLSGMATPTPKRQRSRWDETPATMG
SATPGGATPAVAYTPGVTPVGGVELATPTPGAINLRGAITPEQYNLLRWEKDIEDRNRPL
TDEELDTMFPQEGYKILEPPPSYVPIRTPARKLLATPTPLGTPLYSIPEENRGQQFDVPK
EMPGGLPFMKPEDYQYFGALLNEEDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQ
LTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA
LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN
QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMD
AIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNF
WVRRMALDRRNYRQLVDTTVEIANKVGVPDIVGRIVEDLKDESEPYRRMVMETIEKVVAN
LGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIK
WRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR
ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGM
RVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEGENVYSR
PELTMFV
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggatccagttgatgcagagattgcgaagacacaggaagaaaggaagattatggaagca
gccctagcgcccaattcgattacttttgatactgagctttatgatgggaacaaccgcttt
caggattataacagggagatccctgctaatgatgaagaggagaacgtggatgccatggat
aatgaggttgcccggaaattagcttcttatactgccccaaggtctctcttgaacgatatg
cccagaggtggggatgacgagtctttggggtttaagaaatcgcagaggattattgacagg
gaggatgattacagaaggaggaggctgaatcaggttatttcgccagagagacatgatgct
tttgcaaatggggataagactccaaaacctgaaacgaggacatatgctgatgttatgagg
gaagcagctctgaaaagagagaaggaggagaccttaaaggcaattgctaggaagaagaaa
gaagaagaagagaataaggcagctggaaagggaagggagacagttgctgcacaacctgcc
caaaagaggaggaacagatgggatcagtctcaggatgattcaggtgcgaagaaagcaaag
acaggttctgattgggatatgccagactcaactccagggattggacgatgggatgctacc
ccaacaccagggagagttggtgatgcaactccttcattgtccaggaaaaacaggtgggat
gaaactcctacacctggtcggttggctgattcggatgcgactccagctggtggtggagtc
accccaggtgctactccagccggtatgacatgggatgctactccaaagttgtctggcatg
gctaccccaacaccaaaacgtcagaggtcaaggtgggacgagacaccagcaaccatggga
agtgccacacccggtggtgctacacctgcagtagcatatactcctggtgtaactcctgtt
ggtggggttgaacttgccactcccaccccgggagctataaatttgcgtggtgccatcacg
ccagagcagtataatttgctgagatgggagaaagatattgaagataggaatcgcccgctg
acagacgaagaacttgatacaatgttccctcaagaagggtataagattttggaaccaccc
ccttcttatgttccaatcagaacccctgcaaggaagcttcttgcaaccccaactccttta
ggaacacctctatattcgattcctgaagaaaataggggtcagcagtttgatgttccaaaa
gagatgcctggtgggttgccattcatgaagcccgaagattaccaatactttggtgccttg
ttgaatgaagaagatgaagaggagttgtctccagacgagcaaaaagagcgaaaaatcatg
aaattgcttctcaaggttaagaatgggactcctccgcagaggaaaacagctttgaggcag
ctcactgataaggctcgtgaatttggtgctgggccattgttcaaccgtattcttcccttg
cttatgcagcctactttggaggaccaggagagacacttgttggtgaaggtcatagacaga
gtgctttacaagttagacgagctggtacggccttatgtgcacaaaatcttggttgtgata
gaacctttgctgattgatgaggactattatgctcgtgtagaggggagagaaattatatcc
aatctcagcaaggcagctgggttagctactatgattgctgctatgcgtccagatattgat
aacattgatgagtatgtgaggaacaccactgcaagagcttttagtgttgtcgcatcagca
cttggcatccctgcactgctgccatttttgaaagctgtgtgtcaaagtaagaaatcgtgg
caagctcgacacacaggtattaagattgttcagcaaattgctatactgataggctgtgcc
gttcttccccatttgaggtctcttgtggagattatagaacatggactaaatgatgagaat
cagaaggtcagaacaatcactgccttgtcattggctgcacttgctgaagctgctgctcca
tatggtattgagagctttgactcggttctcaagcctttgtggaagggtattcggtctcac
cgtggcaaggtcttggctgctttcttgaaggcaatcgggtttatcattcctttgatggat
gccatctacgccagctactataccaaggaagtgatggttatactgatccgcgagtttcag
tcccctgatgaagaaatgaaaaagattgtgttaaaggtggtgaagcagtgtgtgagcact
gagggtgttgaggctgattacattcgaagcgatatccttccagagttcttcaggaacttt
tgggttagaaggatggctttggaccgtagaaactataggcagctggtagatacaactgtg
gagatagcaaataaagttggtgttcctgatattgttggcagaatagttgaggacctgaaa
gatgagagtgaaccttatagaagaatggtgatggagacaatcgagaaagttgtagcaaat
ctaggcgcatctgatatcgatgctcgcttggaagagcttctcattgatggtattctgtat
gccttccaggagcagactagtgatgatgccaatgtgatgcttaatgggtttggtgcggtt
gttaatgctcttggacaaagagtgaagccttaccttcctcagatatgtggtactataaag
tggcgtctaaacaacaagagtgccaaggtgagacagcaggctgcagatctgatttcaaga
attgctgtggtgatgaaacaatgccaggaagaacagcttatggggcatcttggggttgtg
ttgtatgaatatttaggagaagaatatccggaagtattgggatcaatattgggtgctctc
aaggcaattgtgaatgttattggtatgactaagatgactcctccaataaaggacttgctc
ccacgtctaaccccaattttgaagaatcgtcacgaaaaagtccaggaaaattgtattgat
ctggtaggtcgtattgctgaccgtggtgcagagtttgtccctgcaagggagtggatgagg
atctgttttgagcttctcgagatgttaaaggcccacaagaagggaatccgtcgggctact
gtcaatacctttgggtacattgcaaaagctattggaccccaagatgtgctagctacgtta
ttgaacaacctcaaggtgcaagaacgccagaaccgtgtttgcacgactgtggctattgcc
atcgtcgcagaaacatgttctcctttcactgttttacctgctctgatgaacgagtatcgt
gtgcccgagctgaacgttcagaacggtgtgctgaaatccctatcctttcttttcgagtac
atcggtgagatggggaaggactacatctatgcagtgactccactactcgaggatgctctt
atggaccgagacttggttcatagacagacagcagcttcagctgttaagcatatggctctg
ggagtggctgggttgggttgtgaggacgctctggtccacttgctgaactacgtgtggcca
aacattttcgagacttcaccacatgtgataaacgctgtgatggaagccatcgaggggatg
agagtcgctttgggggcagctgtcgtgcttaactattgtttacagggtctgtttcatcct
gcaaggaaggttagggaagtttactggaaaatttacaactcgctctacattggtgctcag
gatgcacttgtggctgcttatcctgtgctcgaggatgaaggagagaacgtatacagtaga
cctgagttgacaatgtttgtctga

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