Cynara cardunculus var. scolymus (artichoke): 112523689
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Entry
112523689 CDS
T05604
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112523689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112523689
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112523689
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112523689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
112523689
NCBI-ProteinID:
XP_024989142
LinkDB
All DBs
Position
LG 12:10624247..10661919
Genome browser
AA seq
2312 aa
AA seq
DB search
MFCSVLQYIEHGTEESILLVETCLDHFKIYEEDLKSTHLEPVVASLFRKLLEKPHFSMVF
SGFVRRTAISEEFLDVLSNTLQLSAYEKLGFGLALSDSEKNDIRMAGRNFCMTQFEELRA
THASLYTADWLPKVLKFLEQSEVFSKHVDSFVQMILQVWLNENSGFILAPPHSDQLHDSK
LRMLDFPSSTTKHYSFPFAAVYGNAWKNTEGELPFINHAFKVSPELLFAHSGRLLGYADA
ENDHKFHADHASHPWLCIDHLEHLCLLAEAGQATSVRSLLEFPLKHCPDVLLLGMAHVIT
PYNLLQDEVSSAVLPMLLKDDSKREIVLKLWHVNPVFFSRALKDALNFDPENIYRVINLL
EELEILLSVLALVPMFLGIRLAALAARKEFIDLEEWLSTNLSIYEDIFFEECLEFLKVVE
VDGQDSSDHGEILSVYKETAPTVLKVLQLHTSLLSSNHLFEEMESLYVTSMHNSQIMKDI
DGPSSSTSEVYADDVETDVNLYFQQMFSGQLTVDAMVQMLTQFKGSSEKREQSVFECMIN
NLFEVYKFINRYPDEQLKIVAVLFGLLIRHRLVSHSILGISLQAVLDALHEPTDSKMFVF
GTKALESFVDCLIEWPEYSQKILQFSDLCLTHPRLVLVIEQTLLGPSSSHPKSDEGHNPG
TNQHHSSIPPANAEISASSFPLTGADGAQIDSQVCSPIQPHQRNVSHLDERHKASLTSSS
DTNLNLSTSEQVSIATSSGSVSIQKPQSVVKSSAETSSSPGFSSPSPAVPSARFGSASSI
GTLLAAAERRETPIEAPPSETQDRISLIINNLSAANVEAKAKEFTEVLEEQYYPWFGQYI
VMKRASIEPNFHMLYSNFLQGANSTHLNEEVVRATYENCKVLLRSELIKSSAEERSLLKN
LGGWLGKITIGRNRVLRARDIDPKSLLLEAYEKGLMIGVIPFISKILEPCQSSLAYQPPN
PWTMGILGLLAEIHAMPNLKVNLKFEIEVFFKNLDMDLKAVPPSSLLKGRVRKFEGNPDF
SNKDVGSSQQHIVEEVNSTMRSDVNQVELPPEAAVPTYQGGHSHMLYQHAAPLHLPAVML
GEDEKMRTLGSCSQLSPAQGHQVAQLPFPVTQLPAPALNLLQPVNVNPELQPSHLDMHFQ
SVLPLAMDNAIKEIISSIVQRSASIASHTTVELILKEYSTELDENCILEASCMMVVHLAG
NLAYVTCKEPLRRSISTQLRNLLHGFNIASELPEQAIQRVIHDNLDLGCASIEKAAMDKV
LGNGFHKVASAILLNVVAMAPCCKTAAIATCIKGEGMLCQLVTAGCPGEAIVMTMHNNHA
THFLILHHMLLFNDSWSYKMIVTSLSCALSNHDRMVILLCILCLCWCLFLQGITIVQRVL
SQKVPLRGKHREGDRPATFDPNLLTQGNVGALPEAFYPQSCRLYHPQEQIYEDFVPLPGQ
NSSQHSNILLDVPLVPSFGGSLPQGYALGEGQLIPGIFPSHLGNSGINATAVSLDPVDPE
CSSLRFSSTSSVHTMMGNNNNSPRNNENEGVLPSFPSAPAPQSHALEPNVAKELGIREQP
LLPPSDSERFTRNTVEPSLTTGAALNVFQFLSKKLEFLLANDAKEAEIQSVIAEVPTVIL
RCISKDEAGLAIAQQVFECLYQNANNAGHMDAHLAILAAICDVSKLVGKELTGWVGHFFL
LNYNGVLHSDDDRKFNKYITVGLIHRKLLNLAEYNVHMAKLIDTGKKGMATEFCVSLIQT
LQASDARVISELHNVIDALAKAVAGKDYHLASGSSEPFADPPGFHGQVSMLLSEWCQIWD
CLDVNDATRAHYVLQLNRNVLSKADDMPERFFHVLLELALSHYLASEGINSSHPQLHLQA
DPSPFLVIDSYADLVFTILKGPNKLSLLSKVLAVIVKSIKKGVEEKKASFCPNPYSRLFM
NFLFYLDTLNSVIDDANFQVLTALSSSYHALQPLKVPAFSFAWLELVSNKDFMPKMLTAN
GQKGWPYFERLVIDLLRFMEPLLRTGELADPIRFLYKGTLRVLLVLIHDFPEFLCYNYFN
FCNVIAPRCIQLRNMILSAFPKNMRIPDPNTPNLKVDLLIEMSQPPCILSEFDTALKANK
LKSGVDEYLMMRPEESSFLSELKYKLRLSSSEAERRGTCYNVPLMNSLVLYVGTQAIQKI
QAGMASRATSIAMCIPLSVFFAGAALDIFRTLILELDSEGRYVFFNAVANQLRYPSNHTH
YFSFVMLHFFSELNQEVIQEMITRVLLERLITKRPHPWGALVTFLELVKNPKYNFWNLSF
TKCAPEIENMFYSVSTSCGLTKSEDVSGNGAR
NT seq
6939 nt
NT seq
+upstream
nt +downstream
nt
atgttctgttccgttttgcagtatattgaacatggaacagaagaaagcatattgctagtt
gagacctgcttggaccacttcaagatttatgaagaagacttgaagagtacacatctagaa
ccagtagttgcttcactctttagaaagttgttggaaaagccacatttcagtatggtattc
tctggtttcgtgagacgtacagcaatcagtgaagaatttctggacgttctatccaacaca
ctgcaattatcagcatatgagaaacttggttttggtcttgctttatcagattcagaaaaa
aatgatatcagaatggctggaaggaacttctgtatgacacagtttgaagagttgcgtgct
actcatgcctctttgtatactgctgattggcttcctaaagtgctaaagtttcttgagcaa
tcagaagtcttttccaaacatgttgattcatttgtgcaaatgatactgcaagtttggtta
aatgagaattcaggttttatcttagctcctccgcattcagaccaactgcatgattccaag
cttaggatgctagacttcccctcctctacgacaaagcattattcatttccatttgctgct
gtttatggcaatgcatggaaaaacactgaaggggagttgccatttattaatcatgctttc
aaagtgtcacctgaattattgtttgcacattctggaagactactgggatatgcagatgca
gagaatgatcataagtttcatgctgatcatgcaagccatccatggctatgcattgatcat
ttagaacatctgtgtctactagctgaggcaggccaagcaacttcggttcggtcattgctt
gagttccctttgaagcattgcccggacgtgcttctacttgggatggcccatgttattact
ccatataatctcctccaagatgaagtttcttcagctgtgctacctatgctgctgaaagac
gattcaaagagagaaatcgttctgaaactgtggcatgtcaaccctgtgttcttttcgaga
gcactgaaggatgccctcaacttcgatccagaaaacatatatagagtcatcaacttgtta
gaggagttagagatcctattatctgtactggctctggtacccatgtttctgggaattaga
ctggctgctctcgctgctcgaaaagaattcatagatttggaggagtggttgagcactaat
ttgagtatatacgaagacattttctttgaggagtgccttgaattcctgaaggtggtcgaa
gttgatggtcaggactcttctgaccatggtgaaattttgagtgtctataaggagacagcc
cctacagttttaaaggtccttcaattgcacactagtttgctttcctctaatcatcttttc
gaggaaatggaaagtttgtatgtaacatctatgcacaatagtcaaataatgaaggacatt
gatggccctagttcttcaacatctgaagtatatgcagatgatgtagagacagatgtcaat
ctgtatttccagcagatgttctctggtcagttgacagttgatgcaatggttcaaatgctt
acgcagttcaagggatcttctgaaaaaagggagcaatctgtatttgagtgcatgatcaac
aacctgtttgaagtgtacaagtttatcaacagataccctgatgaacaactaaagattgtt
gctgtcctatttggattgcttattaggcatcgtcttgtgagccattccatacttggcatt
tccttacaagctgttttggatgcattacatgaacctacagattccaaaatgtttgttttt
gggacgaaggccctagaaagttttgtggattgtttgattgagtggccagaatacagccag
aagatcttacagttctcagatctatgtcttactcatcccagacttgttttggtaattgaa
cagacgcttctcggtccttcctcaagccatccaaaatcagatgaaggccacaatcctggc
accaaccaacaccatagttctatcccaccagcaaatgctgagatatcggcttcatccttc
cctttgactggagctgatggtgcacaaattgattctcaagtatgttctccaatccagcca
caccagaggaatgtcagtcatttggatgagagacacaaagcctctttgacttcgtccagt
gatacgaatctgaacttatctacttcagaacaagtctcaattgctacctcaagtggctca
gttagtattcagaagcctcagagtgtagtcaagtcatcggcagaaacgtcttcctctcct
ggttttagttctccatctccagcagtcccctcggctaggtttggctctgcatcaagcatt
ggaacactgcttgctgctgctgaaagaagggaaacacccatagaggccccaccatcagaa
actcaggatcggatctctctcattattaataatttatctgctgccaatgtggaagctaaa
gcgaaagaatttacagaggttcttgaagaacagtactatccctggtttggacagtatata
gttatgaaaagagcaagcatcgaaccaaactttcatatgttgtactcgaatttcctacaa
ggagctaattcaacacacttgaacgaagaggtagttcgagcaacttacgagaattgcaag
gttcttttaagatctgagctcataaagtccagtgcggaagagcgttccttgctaaagaat
cttggaggttggcttgggaagattacaattggtagaaaccgagttctaagagccagagat
attgatccaaaatctttacttctggaggcttatgaaaagggtttaatgattggagtgatt
ccatttatctccaagattttggaaccatgccaaagcagtctagcatatcaaccaccaaat
ccttggactatgggaattcttggattacttgcagaaattcatgcaatgccaaacctcaaa
gtgaatctcaagtttgaaattgaagtttttttcaaaaatcttgatatggatttgaaggca
gtacctccatcatctcttcttaagggcagggtgaggaaatttgaaggaaaccctgatttt
tctaacaaagatgttgggtcttctcaacaacatattgttgaagaagttaattctaccatg
agatctgatgtaaatcaagttgaattgccacctgaagctgctgttccgacttatcagggt
ggccattcacatatgttataccagcatgctgctccactccatcttcctgctgtgatgttg
ggtgaggatgagaagatgagaactttaggctcatgcagtcagctttcacctgctcaagga
catcaagtagcacagttgccatttccagttacccagctacctgcaccagcattaaactta
ctgcagccggttaatgttaaccctgagctccaaccttctcatctcgatatgcatttccag
agtgtgctcccactggcaatggataatgccattaaagaaataatttctagtattgtccag
agaagtgcttctatagcatctcatacaacagtggaacttatcttaaaggagtatagtact
gagttggatgagaactgcatacttgaagcatcatgcatgatggttgtgcatctggctgga
aatctagcttatgtgacctgcaaggaaccgctccgtagatcgatatcaactcagctaaga
aacttgttacatggttttaatattgcaagtgaattacctgaacaagccattcaacgtgtt
attcatgataaccttgatttgggctgtgcatcaattgaaaaggctgcaatggataaggtc
cttggaaatggttttcataaagttgcatctgccatattactgaatgtagttgctatggct
ccatgttgcaagacggctgccattgccacctgcattaaaggtgagggaatgctgtgccaa
ttggtcactgcaggatgcccaggtgaagcgatagtgatgacgatgcataacaaccatgct
actcatttccttatattacaccacatgttgctgttcaatgattcttggagttataaaatg
atagttacgtctttgagttgtgctctatctaaccatgacaggatggttatacttctttgc
atcttgtgtttatgttggtgcctgttcctgcaggggataacaatagtacaaagggtacta
tctcagaaagttccacttagagggaagcacagagaaggtgatagacctgcaacttttgat
ccaaatctacttacacaaggtaatgtaggtgctcttccagaagccttctatcctcaatct
tgccgtctataccatcctcaagagcaaatttatgaggattttgttccgttacctggccaa
aattccagtcaacactcaaatattttgcttgatgttcctttagttccatcatttggtggt
tctctaccccagggatatgccttgggagaagggcaactgatccctggcattttcccatct
caccttggaaactctgggattaatgctactgcagtctcattggatcctgtagatccagag
tgtagttcactgagattttcgagtacttcctcagttcataccatgatgggtaataataat
aatagtccacgcaataatgagaatgagggtgttcttccttcatttccttctgccccagct
cctcaatcgcatgcattagagcctaatgttgcaaaagaattgggaatccgcgaacagcct
ttgcttccaccttcagattctgagcgctttacaagaaacactgtagaaccttcattaact
actggtgctgcattgaatgtattccagtttctttcaaagaagcttgaatttttgcttgct
aatgatgctaaagaagctgaaattcagtcagtaattgctgaggttccgacggttattctt
agatgcataagcaaagatgaggctggcttggctattgctcagcaggtttttgaatgctta
taccaaaatgcaaacaatgctggacacatggatgctcatcttgccatattagctgccatt
tgtgatgttagcaagcttgtggggaaggagctgactggttgggtaggtcatttctttctc
ctgaactacaatggtgtacttcattcagatgatgataggaagttcaacaaatatatcact
gttggattaattcacagaaaattactgaaccttgctgagtataatgttcatatggccaag
cttattgatacgggaaagaaaggaatggcaacggaattttgtgtttccctaattcaaaca
ctgcaggcaagtgatgccagagtaatatccgaactccataatgtcattgatgcattggcc
aaggctgtagctggtaaggattatcaccttgcatcaggatcttctgaacccttcgccgat
cctcctggcttccatgggcaggtttctatgctacttagtgaatggtgccagatatgggat
tgccttgatgttaatgatgcaactcgtgctcattatgttctacaacttaatagaaatgtg
ttgtcgaaagctgatgatatgccagaacgctttttccacgttctcttggagcttgctcta
tcacactatctagcttccgaggggatcaactctagccatccgcaattgcatctacaagca
gatccttcacctttccttgttattgattcatatgctgaccttgtttttacaatcttgaag
ggaccaaacaagctctctcttttgtcaaaggtgttagcggtgattgtgaaatccattaaa
aaaggtgtggaggaaaagaaagcatcattctgtcctaacccgtattccaggctattcatg
aacttcttgttttaccttgataccctgaactctgtcattgatgatgcaaattttcaggtt
ttgacagctctatcaagttcttatcatgccctgcagcccttgaaagttcctgcattcagc
tttgcatggcttgagctagttagtaacaaagatttcatgccaaaaatgctcaccgcaaat
ggccaaaaagggtggccatatttcgagcgcttggtgatagacttgttgcggttcatggag
cctttattgaggactggtgaacttgcagatccgattcgttttctctacaaaggcacactc
agggtgctcttggtgttgattcatgattttccagagttcctttgttataattacttcaac
ttctgtaacgtcattgccccacgctgcatccagttacgaaatatgattctcagtgcattc
ccgaagaatatgaggataccagaccctaacacccccaacttgaaggttgatctgctaatt
gagatgagtcaaccaccctgcattctctctgagtttgataccgctttgaaagctaacaaa
ttgaaaagcggagtggatgagtatctaatgatgaggccagaagaatcttcatttctttcg
gaattgaagtataaactgcgtctttcatcaagtgaagccgaaaggcgtggaacttgctac
aatgtacctttgatgaactcacttgtactttatgttggaacacaggccatccagaagatc
caggcaggtatggcttctcgtgcaacatccatcgccatgtgtattccattgtccgttttc
ttcgctggtgctgctttggacatcttccgaacgttaattctagagctagactctgaaggc
cgttacgtgttcttcaacgcagttgcaaaccaactgcgttatcccagcaaccacacacat
tacttttccttcgtcatgcttcacttcttttccgagttaaaccaggaggtaatccaggaa
atgatcaccagagttctattggagcgattgatcaccaagcgtccacacccatggggtgcc
ctcgtcaccttccttgagcttgtaaagaatccgaaatacaacttttggaacctatctttt
acaaagtgtgcacctgagatcgaaaatatgttctattcagtttcaacatcttgtggttta
acaaaatcagaagatgtttctggtaatggtgcccgataa
DBGET
integrated database retrieval system
