Cynara cardunculus var. scolymus (artichoke): 112524444
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Entry
112524444 CDS
T05604
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112524444
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112524444
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
112524444
NCBI-ProteinID:
XP_024990029
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All DBs
Position
LG 13:complement(1309301..1310348)
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AA seq
282 aa
AA seq
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MAMPIFLLLLGFLAPISTLSSMVQDPKLVVQHVHRSINESRRNMGFLSCGTGNPIDDCWR
CDKGWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSKNDDPVNPKPGTLRYGVIQNEPL
WIIFAHDMTIKLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGVNIHDCKQG
GNADVRDSPDHYGWRTISDGDGISIFGGSHVWVDHCSLANCHDGLIDAIHGSTAITISNN
YMTRHDKVMLLGHSDSLIQDKNMQVTIAFNHFGEGLVQRMPR
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgccaattttccttctccttcttgggtttcttgctccaatctccactttgtct
tcaatggtacaagatccaaagcttgtagtacaacatgtccataggagtataaatgaatcg
aggaggaatatggggtttttgtcatgtgggacagggaatccgatcgacgattgttggaga
tgtgacaagggttgggaaaagaatcgacaacggttagctgattgtgcaatcgggtttgga
aaacacgcaattggtgggcgtgatgggaaaatctacgttgtgacagattccaagaatgat
gatcctgtaaaccctaaaccagggacgttacgatatggtgtgatccagaacgagccctta
tggatcatatttgcacatgacatgaccataaaactgaaggaagagctcatgatgaactca
tttaagaccattgacggtcgcggtgcagatgtccacattgctggcggaccatgcatcacc
atccagtatgtgacgaacatcattatacatggcgtcaacatacatgattgtaagcaaggt
gggaatgcagatgttcgggattctcctgaccattatgggtggcgaacgatatcggacggt
gacgggatctcgattttcgggggaagtcatgtatgggtggatcattgctcattggccaat
tgtcatgatgggttgattgatgccatccatggatccacagccatcaccatatcgaataat
tacatgacacgtcatgataaggtcatgttattggggcatagtgactctttaattcaagac
aaaaatatgcaagtcacaattgcatttaaccattttggggaaggccttgtacaaaggatg
ccaaggtaa
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