Cynara cardunculus var. scolymus (artichoke): 112525133
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Entry
112525133 CDS
T05604
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112525133
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112525133
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112525133
NCBI-ProteinID:
XP_024990869
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All DBs
Position
LG 13:9981167..9983563
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AA seq
563 aa
AA seq
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MSPTNLFIYILLTSIKAWAYQHPHPHDIVLHLQRKLNASMSSRRRLIEANPMFLQSKDQT
PCQTGNPVDDCWRCDPNWANDRQRLADCAIGFGQAAMGGKGGRIYIVTDPTDGDPENPPP
GTLRHAAIQSEPLWIIFANDMHINLENELIVSSSKTIDGRGAIVHVTGKGCIVIENVGNI
IIHGLYIHDCEPSGKAKIRVSPTDVVGRGKSDGDGLTIKGVRNLWIDHCSFARCTDGLVD
VTEGSTAVTITNCYFTDHDKVMLLGHSDDYLADAGMQVTVAFNHFGKGLVERMPRCRHGY
FHVVNNDYNEWQLYAIGGSAAPTINSQGNRFIAAPHSHKEVTKRMEAKDDEWKGWNWRSE
GDLMVNGAFFVPSGAELSTQYDRASSVPPMSAYLINQLTMHAGALVGVPSNLGDNSPGGG
PPVITPPVEGQPSGGNPNIPPGTMPYDGGSYGTTYGTTPPGCFVSGKTPGGCIPGNIQGG
GNPGMVPGGGYGMVPGSPPPAMVLQGCGPGIIPYCGGPGSRRISGASGSIGTMARSSIPT
NIFLSSLVVLSLHMTMTHSVLLQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctaccaatctattcatctacattctcttaacttctatcaaggcatgggcatat
caacatccacaccctcatgacattgttctgcatctacaaaggaaactaaatgcttcaatg
agctccagaagaagattaattgaagcaaatccaatgtttcttcaatcaaaagatcaaaca
ccttgccagactggaaaccccgttgatgattgctggcggtgtgatcccaattgggccaac
gaccgccaacgtcttgctgactgcgcgattggatttggccaggcggcaatgggcgggaaa
ggaggtcggatctatatcgttaccgacccgactgatggagaccctgaaaatccacctcca
ggaacactcaggcatgccgccatacaatctgagcctctctggatcatattcgccaacgac
atgcacattaatctcgaaaacgagctcattgtcagcagctcgaagaccatcgatggtcgt
ggagcgattgtgcatgtgacagggaaaggctgcattgtgatagagaatgttggaaatatc
atcattcatggtctctacatccatgattgcgagccatcggggaaggctaagattcgggtg
agtccaacggatgtggtaggcagggggaaatcggacggtgatggattgacgatcaagggg
gtgaggaatttgtggattgaccattgttcttttgccaggtgtacggatggattggtggat
gtcacggaggggtccaccgccgtgacgataaccaactgctatttcaccgatcacgataag
gtcatgttattgggtcactcggatgactatttggctgatgcaggaatgcaggtaacagta
gcattcaatcacttcgggaaagggctcgtggagagaatgccaagatgtcggcacgggtat
ttccatgtcgtgaacaacgactataacgaatggcagttgtatgccattggtgggagcgca
gctcccaccatcaacagtcagggcaaccgtttcattgccgcaccccactctcacaaagag
gtgacgaagcgaatggaggcgaaggacgacgaatggaaggggtggaattggaggtcagaa
ggggacttgatggtcaatggagcgttttttgtcccctccggtgcagaactcagtacacag
tatgacagggcctccagcgtgccgccgatgtcagcctacctcataaatcaactcactatg
catgccggtgcacttgtaggcgtcccgagcaatctaggtgataattctcccggtggcggt
cctccggtgatcactccaccagttgagggtcaaccaagtggtggcaaccctaacattcct
ccaggcaccatgccatatgacggtggcagctatggcaccacttatgggaccacaccacca
ggttgctttgtgtctggaaaaacaccaggtggttgtattcccgggaacatacaaggtggt
ggcaatcctgggatggtcccaggcggtggttatgggatggtcccaggatcaccaccacct
gcaatggtgctacaaggttgtgggcccgggataataccttattgcggtggtcctggcagc
agaaggatttcaggtgcatcaggcagcattggcacaatggcacgctcatcgataccaacc
aacatcttcttgtcttccctagttgtattatcactgcacatgaccatgactcacagtgtt
ctattacagtaa
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