Cynara cardunculus var. scolymus (artichoke): 112526501
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Entry
112526501 CDS
T05604
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112526501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112526501
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112526501
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112526501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
NSP2-B_epitope
Motif
Other DBs
NCBI-GeneID:
112526501
NCBI-ProteinID:
XP_024992563
LinkDB
All DBs
Position
LG 14:complement(10355597..10386050)
Genome browser
AA seq
2412 aa
AA seq
DB search
MIPLAQRFSTEIRLLFESLNDSNFDSVLRELSQYVDYGTEGSVLLLETCLDHFNVYEKDL
KSTRLEPVVASLFRKMLEKPQFSTVFSVSVRPTAITEEFLDNLSIALQLSAYEKLGFGLA
LTDSENNDIRMAGRNFCMGKIEELFATHTSLHTADCVQDILLFLNKSEVLSKHVDSFMQL
LSLVQFDKDSGFILAPLLSDELQDSKLLSDIDFLSEGNDDEFDAILAEMEKEMSMADMLR
ELGYKCTLDVSLCKDLLSSFSPLTEITVARILGTIVRFDAGLQDHENAFSTFCSALGRGS
LSDMSSLNSWNTDVLIESIKQLAPGISWTTVIENLDHEGFYIPDEAAFLLLISCYRHASQ
DPFPLAAVCGNIWKNTEGQLSFLKCAVSVPPEVFTFAHCERQVAYVDIANNHKFQSGHAN
HAWLCLDLLEVLCQLAERGLANSVRLLLEHPLRNCPEVLLFGMAHVNTPYNLIQHEVSSV
VLPMILKDASLGGILLHLWHVNPPFLLRALNDTLNMDADNTNRVLDIFQELKIVSPVLDM
VPMYLGIRLAALASRKELVDLEKWLSMNLSTYRDTFFEECLRFLKEVEFGAHESSNRLHN
SSNIWSLYMETAPVFLKVLQSHTSLLSSNQLSKEMERLHLKSTNNSSRMKNNGGPDSSTS
EVYADDIETEANSYFQQMFSGVLTIDAMVQMLARFKESSEKREQSIFECMIANLFEEYKF
FNRYPDRQLKLAAVLFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKF
VDRLIEWPQYCQHILQISHLRGTHSELVAFIERALARISSGHPESDAGHNPAADQHHNSI
PQANIEMAASSFPLIGSGGGQLGSQIPSPIQLQQRNQSYLDERHRASVTSSNYMKPNLTN
AGQVSVAPASEPVSIPKPQSVVSSSAALASSPAFVRPSRGSSARFGSALNIETLVAAAER
RETPIEAPPSETQDKISFIINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEP
NFHDLYLKFLEKANSKPLNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKIT
IGRNHVLRAKEIDPKALIIEAYEKGLMIAVIPFTSKILEACQSSLAYQPPNPWTMGILGL
LAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVTPTSLLMDRVREIEGNPDFSNKDVGSAQ
QPMVGEVKSSMISTLNQVELPLEVASSSHPGSHSRILSQYAAPLHLPAATLSEDEKMAAL
GLSDQLPSAQGLLQAQLPFSVGQLPASNIDQQVIVNPKLQALGLHLHFQSVLPMSMDRAI
KEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKEPL
RGSISSQLRNNLQTFNIASELFEHAIQLATNDNLDLGCALIEQAATEKAVQTIDGELAPQ
LSIRRKHREGVGPAFFDASLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQS
NQNSNAVPLGPSAPQGSGALHRGYGSASGQLNPGIFSSSLGNSGINAVAHSLDPEDIEPS
SVKLLSASSVHSGMAGGIGPHNFENEAVLSSFSSVSAPELHITESSNVTKESGAYAQPLP
SPSAAASDRIISTTAEPSLTTGDALDKYQIISEKLESLIANDAKETEIQSIIAEVPGVIL
KCISRDEAALAVAQKVFKGLYENAANAAHVGAHLAMLAAIRDVSKLVVKELTSWVIYSDE
DRKFNKDITIGLIRRELLNLAEYNVHMAKLLDAGKNKVATEFAISLIQTLVASDARVISE
LHNLVDALAKLATRPDAPEALQQLVEIARNPAASSGFSAGKDDLIRQPKDKKVANHPVAN
RDDSTALESSEPDPAGFHEQVSMLFAEWYRIYELPGVNDAISARFVLQLQQNGLLKADDT
SDRFFRRLLDVAVSHCISSEVINSNSLQSHQQAQSLSFLAIDMYASLVFSILKFSPVDHG
LSKLSLLSKVLAVTVRFIQKDAEEKKTSFNPRPYFRLFIDWLLDLSTLDPVFEGANFQVL
TALATSFHALQPLKVPAFSFVWLELVSHRSFMPKLLSGNAQKGWPYFQRLLVDLFQFMEP
FLRNAELGEPVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFP
RNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKSDVDEYLKTRPQGTSFLSE
LKQKLLLSPNEAARAGTRYNVPLMNSLVLYVGMQAIQQLQARTPHGQSMASNASLAIFLV
GAALDIFQTLILELETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQI
TRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPK
PVDDNVVADTMH
NT seq
7239 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgcaaagattctcaactgaaattcggctgttgttcgagagcttgaac
gattccaatttcgactccgttcttcgcgaactctctcagtatgttgattatggaacggag
ggaagtgttttgcttctagagacctgcttggaccactttaatgtatatgagaaggacttg
aaaagtactcgtctggaacctgtagttgcttcactttttagaaaaatgctggaaaagccg
cagtttagtactgtattctctgtgtcagtaaggccaacagcaatcactgaagaatttctg
gataatctatctattgcgctacagttatcggcatatgagaaacttggatttggcctagct
ttgacagattcggaaaacaatgacattagaatggctggaaggaacttctgtatgggaaag
attgaggaattgtttgctacccatacctctttgcataccgctgactgtgttcaggatata
ttgctgtttcttaataaatctgaagtcctttctaaacatgtggattcatttatgcaattg
ttatctctggttcagttcgataaggattcggggtttattttagctcctctcctttcagat
gaactgcaagactccaagttattgagcgatatcgattttcttagtgaaggcaatgatgac
gaatttgatgctatcctagcagaaatggagaaggagatgagcatggcggacatgttgaga
gaattgggttataagtgcacattagatgtatcgctgtgcaaagatttgttatcttcattc
tcaccgctaactgaaatcactgttgctaggatactaggcacaattgtccgatttgatgcc
ggtcttcaggaccatgaaaatgcattttcaacattttgttctgctcttggtagagggagt
ctgtccgatatgtcatcattgaactcctggaacactgatgtccttatagaatcaattaag
cagcttgctcctggaatcagctggaccactgtaattgagaatcttgatcatgagggtttt
tacatccccgacgaggcagcatttttgctattgatttcctgttacagacatgcatctcag
gatccttttccactggctgctgtttgtggcaacatttggaaaaacaccgaggggcagctg
tcatttctgaagtgtgctgtttctgtaccacctgaagtattcacatttgcacactgtgaa
agacaagtggcatatgttgatatagccaataatcacaagtttcaatctggtcatgcaaat
catgcatggctatgcctcgaccttttggaggtcttgtgccagctagctgagagagggctt
gcaaattctgtgcggttgctgcttgaacatcctcttaggaattgtcccgaagtgttgtta
tttgggatggcccatgttaatacaccatataatctcatccaacatgaagtttcttcggtt
gttcttcctatgatacttaaagatgcttctttgggtggcattctgctccatctttggcat
gtaaaccctccctttttgttgagagctctaaatgacacactcaacatggatgcagataac
acaaacagagtattggatatattccaggagttaaagattgtatctcctgtattggatatg
gtacctatgtatttgggtatcaggctggctgccctggcttctcgaaaagagctcgtagat
ctggagaagtggttgagcatgaatttaagcacttacagagatactttctttgaggagtgc
ctccgatttctgaaggaggtggagtttggtgctcatgaatcttccaatcggttgcataac
tccagtaacatctggagtctttatatggagactgctcctgtgtttttaaaggtccttcaa
tcgcatacaagcttgctatcctcaaatcaactttctaaggaaatggaaagattacatttg
aagtctacgaacaatagttcaaggatgaagaacaatggtggtcctgattcgtcaacatct
gaagtgtatgcagatgatatagagacagaggccaactcttatttccagcaaatgttctct
ggtgtgttgacgattgatgcaatggttcaaatgctagcccgatttaaggaatcttctgaa
aagagggaacaatcaatattcgagtgcatgattgccaacctgtttgaagagtacaagttc
ttcaacagatacccggacagacaacttaaacttgctgccgttctctttggattgcttatt
aagaatcaacttgtgactcatctgacactgggtattgccctacgagctgttttggatgca
ttgcgcaaacctgcggattccaaaatgtttgtttttggtacaaaagctctggagaagttt
gtggatcgcctgattgaatggccacaatactgccaacatatcttacaaatatcacatcta
cgtggtactcattcagagcttgttgctttcattgaaagggcgcttgccagaatttcatca
ggccacccagaatcagatgcaggccacaatcctgctgccgaccaacaccataattctatc
ccgcaagcaaatatcgagatggcggcttcatctttccctttgattggatctggtggtgga
cagcttggttctcaaataccttctccaatccagcttcagcagaggaaccagagttattta
gatgagagacacagagcctctgtaacttcgtccaattatatgaagccaaacttaactaac
gcagggcaagtctcagttgctccagcaagtgaacctgttagcatcccaaagccacagagc
gttgttagttcttcagcagcgttggcttcctctcctgcatttgttcggccatctcgtggt
tcttcagcaaggtttggttctgcattaaatattgaaacacttgttgctgctgctgaacgc
agagaaactcccatagaggccccaccatcagaaactcaggataagatctcatttatcatc
aataatttatcggctgccaatattgaagctaaagcaaaggaattcacagaaattttgaaa
gagcagtactatccttggtttgcacagtacatggtcatgaaaagagcgagcattgaacca
aactttcacgacttgtacttgaagttccttgagaaagccaactcaaaacctctaaacaga
gagattgttcaagccacatatgagaattgcaaggttcttctaggatctgaacttataaag
tctagttcggaagagcgttcgttgctgaagaatcttggaggctggctggggaagatcacg
attggtagaaaccatgttctgcgtgctaaagagattgatccaaaggccttaattattgag
gcatacgaaaagggtttaatgattgcggtgattccatttacctccaagattttagaggca
tgccaaagcagtctagcatatcaacctcctaatccttggaccatgggaattcttggatta
cttgctgaaatttatgcaatgccgaatctcaaaatgaatctcaagtttgaaattgaggtc
ttgttcaagaatcttaatgtggatttgaaggaagttaccccaacatcccttcttatggac
agagtgagagaaattgaaggaaaccctgatttttctaacaaagatgttgggtcggcccaa
caaccaatggttggggaagttaaatctagcatgatatctactctgaatcaagttgaatta
ccacttgaagttgccagttcatctcatcctggcagtcattcacgtatattgtcccagtat
gctgctcctctccatcttcctgctgctaccttaagcgaggatgagaagatggcagcttta
ggcttatctgatcagcttccatctgctcaaggacttctacaagcgcagttgccgttttca
gttggtcagctgccagcatcaaatattgaccaacaagttattgttaaccccaagcttcaa
gctctgggcctgcatttgcacttccagagtgtgctcccaatgtccatggatcgggctatc
aaagaaatagtttctagcattgtgcagcgtagtgtttctatagcaactcaaacaacaaag
gaacttgtcttaaaggactacgctatggagtctgatgagagccgtatacatagtgcagct
cacttgatggttgcaagtttggctggaagtttggctcatgtgacatgcaaggaacctctt
cgtggttcaatatcaagtcagctaagaaacaatcttcagacttttaatattgccagtgaa
ctgttcgaacatgcaattcagcttgctactaatgacaaccttgacctgggctgtgcatta
attgaacaggcggcaacagagaaggctgtacaaacaatagatggcgaacttgcaccacaa
ctttcgataagaaggaagcatagagaaggggttggacctgccttttttgatgcaagcctg
tatacacaaggtcatgtaggtgttctaccagaagctctgcgtcctaaacctggccgctta
tcccattctcaacagcgggtctacgaggattttgttcggttaccctggcaaaatcaatcc
aaccaaaactcaaatgctgtacctcttggtccttcggctccccaaggaagtggtgctcta
caccggggatatggctcagcttcagggcaactaaaccctggaattttctcatctagcctg
ggaaattctggtattaatgctgtcgcacactccttggatcctgaagatatagagcctagt
tcagtaaaactccttagtgcttcttcggtacatagtgggatggctggtggtattggtcca
cacaattttgagaatgaagctgttctttcctcattttcttcggtgtcagctcctgaattg
cacataacagaatcttccaatgttaccaaagaatcgggagcttatgcacagcctttgcct
tcgccttcagctgcagcttcagatcgcattataagtaccactgcagaaccttcattgact
actggggatgcattggataaataccagattatctcagagaagctggaatctctgatagca
aatgatgctaaagaaacagaaattcagtctattattgccgaggttcctggggtcattctt
aaatgcattagtcgggatgaggctgccttggctgtggctcagaaggtcttcaaaggctta
tatgaaaatgcagcgaacgccgcacatgttggtgctcatcttgccatgttggctgcgatt
cgtgatgttagcaagcttgtggtgaaggaactgactagttgggtaatatattctgatgaa
gataggaagttcaacaaagatattaccattggcttaattcgcagagagttgctgaacctt
gccgagtataatgttcatatggccaagcttcttgatgcgggaaagaacaaggtggcaaca
gaatttgcaatttccctcatccaaacattggtggctagtgatgccagagtaatatctgaa
cttcataatcttgttgatgcattggcaaagcttgcaacaaggcctgatgctcctgaggct
cttcaacagcttgttgaaattgctaggaacccagcagcttcctctggcttttcagctggc
aaggatgatttgatcaggcaaccaaaagacaaaaaggtggctaaccatcctgtagcaaac
agggacgacagcactgctttggaatcttctgaaccagatcctgctggtttccatgagcag
gtttctatgctatttgctgaatggtaccggatatatgaactccctggtgtcaacgatgca
atatctgcgcgttttgttctacaactgcagcaaaatgggttgttgaaagcagatgataca
tctgaccgcttttttcgccgtctcctggatgttgctgtatcacactgtatatcgtctgaa
gtgatcaattctaactctctccaatcccatcagcaagcacagtcattatctttccttgct
attgatatgtatgcatcactggtcttttcgatactgaagttctcccctgttgaccatgga
ttaagcaagctgtcacttctgtcgaaggtgttagcagtgactgtgagattcattcagaag
gatgcagaggagaagaaaacatcgttcaatcctaggccatatttcaggttattcattgat
tggctgcttgaccttagcaccctggatcctgtttttgaaggcgcaaactttcaggttttg
acagctctagcaacttcttttcatgccctgcagcctctgaaagttcctgcattcagcttt
gtatggcttgagctagtaagtcacagaagtttcatgccgaaactgctcagtggaaatgct
cagaaggggtggccatatttccaacgcttgctggtagacttgttccagttcatggagcct
ttcttgaggaatgctgaacttggggagccggttcgttttctgtacaaaggcacactcaga
gtgctgttggtgttgcttcatgattttccagagttcctttgtgattatcatttcagtttc
tgtgatatcattcctccaagctgcatccagatgcggaatatagtactcagtgcgtttcca
cgcaacatgaggctacctgacccgtccactcccaacttgaagattgatctgctggctgag
attagtcaatcgccccgcattctttcagaggtcgatgcagctttgaaagccaagcaaatg
aaaagtgatgtggatgagtatcttaagacgaggccacaaggaacttcatttctttctgaa
ttgaagcagaaactacttctttcaccaaatgaggctgcaagagctggaacacgatacaac
gtgcctttgatgaactcccttgtactttacgttggaatgcaggcgatccagcagctgcag
gcaagaactcctcatggacagtcaatggcaagtaatgcttcactggctatcttcttggtg
ggtgctgctttagatatctttcaaacgctaatactggagctagagacggaaggacgttac
ctctttttgaacgccgttgcaaaccaactgcgctatcccaacaaccacacacattacttt
tccttcatccttctttacttgttctccgaatcgaaccaggaagcaatccaggaacagatc
acgagagttctattggagcgattgatcgttaaccgaccacacccttggggacttctaatc
accttcattgagctaattaagaaccctaggtacaacttctggagccgatctttcacaagg
tgtgctccagagatcgagaaactgtttgagtcggtttcaagatcgtgtggcggcccaaaa
cccgtggatgacaatgtggttgctgataccatgcactag
DBGET
integrated database retrieval system
