Cynara cardunculus var. scolymus (artichoke): 112527854
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Entry
112527854 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112527854 isoform X1
KO
K19022
AP-5 complex subunit beta-1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112527854
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
112527854
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
Motif
Other DBs
NCBI-GeneID:
112527854
NCBI-ProteinID:
XP_024994455
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All DBs
Position
LG 15:12914785..12922034
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AA seq
1149 aa
AA seq
DB search
MNTAEMENNPAPAPTPLKHLTSQEWELLIDDHQYGGSRRERWITLNYTGFPLVDLALSSI
IRKDLPLNLKLHLIVFLEEYLITFFPLPESNSETEQTLIRFLETLRSVINSPVDGISITY
SLKEQLLVSTTSIFILFTIDNTDDSKTPNFTYTSQLEGLIDVLLTVVNRPNHGIDRQLRG
AACECLRELERECPSLLSEIAGHLWGLCQSEKTHVAQSYVLMLANVVHGIVISKVNVSML
STSIPLTPFNVPLFLTGGGSARENSGLAVKELRRVMSFLLEWPQYLTPFGLFEFMSIIMP
VAVALELQASLLKVQFSGLLYTFDMLLCHAFLGMYLQFPEAFNGQENEVVSRLLLISRET
QHVLVFRLLALHWLLGFLGLVMSKRKVIKEKIFATALRFYPTVFDPLSLKALKLDLIAYC
SILLDMSRLADANGQMVSDVGNSEVPVVKLFEDGLESVSGFKWLPPWSTETSVAFRTFHK
LLIGASSHSDTDSPTRDLMESKIFHASETMLVTMTLESQGLIPVIVAFVNRLLGCSKHRC
FGVRLLQTFDNHLLPKVNVDRLGSYFPLFGKIAESDTVPPGGLLDLLGRYMSILVEKHGP
ETGLRSWSQGSKVLVLCRTILMHHQSSRVFLGLSRLLAFTCLHFPDLEVRDNARIYLRML
LCVPGKKLRHLLSTGDQLPGISPSSHSSSFFSVQSPRFSYDSKKSKEISSYIHLERVVPL
LVKQSWSLSLTSFGIGGDKPRYLEVIKDSDTPSAQPDTADGNIDFPIIPAIEGPSEPLRV
TDSKISEIVGILRRHFSLIPDFRHMAGIKIGISCTLSFQSLPFNRVWGDNSLANGSSGVD
VLPALYATVLKFSSSAPYGSIQPYRIPFLLGEPGKNDIPSTQIDSLDIVPVGNSPEEEED
DENFKAPVLIELQPREPSPGLIDVSIEANAENGQIICGHLQSITVGIEDMFLKALVPDDI
TDDAVPGYFVDLFNALWEACGSSSSTGRETFPLKGGKGVAAVNGTQSVKFLDVPATSLVR
AVERNLAPFLVNVIGDTLINIVKDGGIIKDIIWNDDTSGSSLDVVPLDSDMIEGPLYLKY
DEEEDDRGNNLHLTKGNIGCFHILIFLPPTSHLLFQMEVGIDSTLVRIRTDHWPCLAYID
DYLEALFLA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgaaatggagaacaatccggcaccggcgccgacaccgctgaaacaccta
acgtcgcaagaatgggagctcttaatcgacgaccatcaatacggtggatcccgccgtgaa
cgttggatcacgttgaactacactggtttccctcttgtcgacctcgctctctcctccatc
atccgcaaagacctcccactcaacctcaagctccacctcatcgtcttccttgaagaatac
cttattactttctttcccttgccggaatccaattcagaaaccgaacaaaccctaattcgg
ttcctcgaaacactgcgctccgtcatcaattctccagtcgatggcatttcaatcacttat
tctctcaaagaacagttactcgtatcaactacatctatattcatcttgtttaccattgat
aacactgatgatagtaaaacccctaattttacttatactagtcaactcgagggtttgatc
gatgtgctgttgacggtggtgaaccgcccgaaccatggaatagaccgacaactacgcggt
gctgcatgcgagtgtttgagagaattagagagagaatgccctagtttgttatcagaaatt
gctgggcatttatggggattatgtcaaagtgagaaaactcatgtcgctcaaagctatgtg
ttgatgctagcaaacgtggttcatggtatagtgatttcgaaggtaaacgtttcaatgctt
agtacttcaattccgttgacaccatttaatgttcctctgtttttgactgggggaggttcg
gcgagagaaaattctggtttagcggttaaggaattgaggagggtaatgtctttcttactt
gagtggcctcaatatttgactccatttggattatttgagttcatgtccattataatgccg
gtggcagtggcattggagttgcaggcttctttgttgaaggtacagttttctgggttgctt
tatacattcgatatgctgctctgccatgcattcctagggatgtatttacaatttccggaa
gcatttaatggacaagaaaatgaagttgtcagtcgtcttttgctaatttcaagggaaaca
caacatgttttggtttttagattgcttgcacttcattggctattgggcttcttgggattg
gtgatgtcaaagagaaaggtcatcaaagagaagatttttgcgacagctttgcgattttat
ccgactgtattcgaccccctttctttaaaagctttgaagctcgacttgattgcatattgc
tcaatattacttgacatgtctagattggccgatgcaaatggtcaaatggtttcagatgta
ggcaactctgaagtgcctgtggtgaagctatttgaagatggtcttgagtctgtatccggt
ttcaagtggttgccaccatggagcacagaaacttcagtcgcctttcgcaccttccataaa
cttttgataggtgcctcttctcattctgatactgattctcccaccagagatctcatggag
tctaaaatcttccatgcttcagagacgatgctagtaacaatgaccttagagtctcaggga
ttgattcctgtcatcgtagctttcgtcaaccgcttgctagggtgttctaagcaccgctgt
tttggagtgcgcttgcttcagacatttgacaatcatttgcttccaaaggttaatgttgac
agactgggatcttatttcccactctttggcaaaattgctgaaagtgatacagttccacca
ggtggattgctagatctgcttggtagatacatgagtattctagttgaaaaacatggtcca
gagacaggattgagatcatggtctcaaggaagtaaagttctcgttctttgtcgaacaata
ctgatgcaccaccagagctctagagtctttctcggattatctcgtctcctagcattcact
tgccttcattttccagatctggaggtccgtgataatgcaagaatatatttgcggatgctg
ctctgtgtacccggaaagaagctcagacacttgctgagtactggggatcaacttcctggt
atttcaccatcttctcactccagctcgttcttcagtgttcagtctcctcgattttcttat
gattctaagaaatcgaaggaaatttcatcctacatccaccttgagcgagtagtaccgcta
ttggtcaaacaatcttggtccttgtctttgacttcatttggcattggtggtgacaagccc
cgttatctggaagtcatcaaggacagcgacaccccatcagcgcaaccagacacagcagat
ggtaatattgatttcccgattatccctgcaattgaaggacccagtgaacctctgcgtgtg
acagattcaaagatttccgagatcgttggaatattaaggagacatttttcattaattcct
gatttcagacacatggcaggtattaaaattggaatatcctgtaccttgagcttccaatcc
ttaccttttaatcgagtatggggagataactcgcttgctaatggatcttctggggttgat
gtccttcctgcattatatgctactgtgctcaagttttcttcctcagcaccatatgggtct
attcaaccttatcgcataccgtttcttctcggggaacctggaaaaaacgatataccttcc
actcaaatcgattccctagatattgttcctgtgggcaacagtcctgaagaagaagaagat
gatgaaaacttcaaagctccagttctgattgaattgcaaccgagagaaccatcaccaggg
cttattgatgtctccatagaagcaaatgccgaaaatggtcagatcatttgtggtcatctt
cagagcattactgttggtattgaggacatgtttcttaaagctcttgttcctgacgacatt
actgacgatgcagttccaggatatttcgtagatttgtttaatgctttatgggaagcatgt
ggcagttcatccagcactgggagagagacctttccgttaaaaggaggtaaaggcgttgca
gctgtcaacggaacacaatccgtcaagtttcttgatgttcctgcaacttcgttagttcga
gctgttgaaaggaacttggcgccttttcttgttaacgtgattggtgatacgctcattaat
attgtcaaagatggaggtatcataaaggacatcatttggaacgatgatacttcaggttct
tctcttgatgtcgtccctttggactcagatatgatcgagggcccactttatctcaagtac
gatgaggaagaagatgacagagggaataatcttcatctcactaaaggaaacattggttgc
tttcatattttgatattccttcctccaacatctcatcttctttttcaaatggaagttggg
attgactcaaccctagttcgcatccgaacggatcattggccgtgccttgcttatattgat
gattatttggaagctctgtttcttgcttag
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integrated database retrieval system
