Cynara cardunculus var. scolymus (artichoke): 112528269
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Entry
112528269 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
3.6.4.13
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112528269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112528269
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112528269
Complex C
U5 SnRNP specific factors
112528269
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-GeneID:
112528269
NCBI-ProteinID:
XP_024995030
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Position
LG 15:13142808..13147840
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AA seq
714 aa
AA seq
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MKRSTDDIGEKLQAKKPVFLTKAEREQLALKRRQDEFDEQKRRSEQLLLQNNPNSSSSKP
PLSSDDASRHHRSSRDYDRDRDRDRRDRDRDRDRDRERERERERERDSERRNRDRERDEE
HKARERARLEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRD
MNILYQNPHEARLLFGRGFRAGMDRREQKKLAAKNEKELRDEIRKKDGIEERPEEAAAQR
LKEEAADMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESK
LSSELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLTYITRLP
PISEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLGIKVVSIVGGQSIEEQGFKIRQG
CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNFKPE
NEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVK
ESEKMSRLQKLLDELVDKTAIVFINTKKSADFVSKTLEKSGYRVTTLHGGKSQEQREISL
EGFRTKRFNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGIATTF
LTLHDTDVFYDLKQMLTQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctccacagatgatattggtgagaaattgcaggccaagaagcctgtctttctc
actaaagcagagcgagaacaattagccctcaagcgccgccaggatgaatttgacgaacag
aagcgccgttctgaacagcttcttctccagaataaccctaattcttcatcatctaaaccc
ccactgtcctccgatgatgcctctcggcaccatcgttcttctcgtgattacgatcgtgac
cgtgaccgtgatcgccgtgatagagacagagacagggatagggatagggagcgtgagagg
gagagagaaagggaacgggactctgagcggcggaaccgtgacagagaacgcgatgaagag
cacaaggctagggaaagagcccgtttagagaagcttgcggagcgagagcgtgaaaaggag
cttgaggccatcaaggagcagtacttgggatccaagaaacctaagaaaagggtaatcaag
cccagcgagaagtttcgtttctccttcgattgggagaacacagaggatacttctcgtgat
atgaacattctctatcaaaaccctcatgaggcccgtctcctctttggaagaggttttcgt
gctggtatggatcgcagggagcagaaaaagttggctgcaaagaacgagaaagagttgaga
gacgagattaggaagaaggatgggattgaggaaaggccagaggaggctgctgctcagagg
ctcaaggaagaagctgcagatatgtatgatacattcgacatgagagttgatcgtcactgg
tcggagaagaaactcgaggagatgacagagagagattggaggatcttcagggaagatttt
aatatatcttacaagggttccaaaatccctaggcccatgaggagttgggttgaaagtaag
ttgagttctgagctcttgaaagcggtagagagggctggttacaaaacaccatcccccatt
caaatggctgctattccccttggtctccaacagcgtgatgtaattggggttgccgagact
ggttcaggtaagactgctgcctttgttcttcctatgttgacttacataacccgacttcct
cccatcagtgaagaaaatgaggccgagggcccttatgcggttgtcatggctccaacccga
gaacttgcacagcaaatcgaggaggagactgttaagttcgcccattatttaggcatcaaa
gttgtttccattgttggtgggcagtcaattgaagagcaaggattcaagattagacaaggg
tgtgaagttgtcattgctactcccggacgtcttatcgattgcctagagaggcgttatgct
gtgttaaaccagtgtaactatgttgttctggatgaggctgaccgtatgattgatatgggt
ttcgaacctcaagttgttggtgttctggatgcaatgccatcaagcaacttcaaacccgag
aatgaggatgaagagcttgatgagaaaagaatataccggaccacttatatgttcagtgcg
actatgcctccagctgtggagagactagctagaaagtatctacggaaccctgttgttgtg
accattggaactgcaggaaaggcaactgatctcattacacaacatgttatcatggtgaag
gaatcggagaaaatgtctaggttgcaaaaactgctggatgaacttgtggataagaccgcc
attgtcttcataaacactaaaaagtccgctgactttgtatcaaaaacattggaaaagtct
ggttaccgtgtgacaactttgcacggtggcaagtcacaggagcagagggaaatcagcctt
gaaggttttaggaccaaaagatttaacgttttggtagcgacggatgttgcagggcgtggg
atcgatatacctgacgtagctcatgtgataaactatgatatgccagggaacattgaaatg
tatactcatcgtataggacgtacgggtcgtgcagggaagacgggtatagcgaccacattc
ttgactctacatgatactgatgtgttttatgatcttaaacagatgcttacgcagagtaat
agtcccgtgccgcctgaacttgctagacacgaggcttcaaagttcaagcctggatcgatt
cctgatagaccacccagacgtaacgatacagtttttgcgcattga
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