Caretta caretta (Loggerhead turtle): 125620656
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Entry
125620656 CDS
T09292
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125620656 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125620656 (CNOT1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125620656 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125620656 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
125620656
NCBI-ProteinID:
XP_048672605
LinkDB
All DBs
Position
12:5447496..5537789
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTEGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQLRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAVPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTAFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTPTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLL
VATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRV
SIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAP
KKDVKQPEELPPITTTTASTTPATNTTCTASVPPQPQYSYHDINVYSLGGLAPHITLNPT
IPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLMMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMAEL
EQHLQSIPHTLAMNPQAQALRSLLEAVAVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVTM
QQYDLHLAQSMENGLNYMAVAFAMQLVRILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgatccaggagtgtgcgtcg
ctgattacaaagccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccatttatttgcccagctgagtaaagttatcaaa
ttaagcaaagttcaagaggtgatttttggtcttgctttactgaactccttcagctcagat
ctacgaggttttgctgcccagtttattaaacagaaacttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcacctcctcctgtcccatctcctttttgggcagaagggagcctttggggttggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacatcctaatggataggatcctg
cctgattctggagggatagccaaaacaatgatggagagctctctggcagacttcatgcaa
gaagtaggctacggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcgggattgacagagggtattccattacaatctatttcggctcctggcagtgggatc
tggagtgatgggaaagataaaagtgatggaacgcaagcccatacctggaatgtggaggtc
ttgatagatgttcttaaagagctgaatcctagtttgaacttcaaggaagtaacctatgaa
ctggaccaccctgggtttcaacttcgtgacagcaagggtctgcagattgtggtgtacggt
atccaaagagggctaggcatggaagtcttcccagttgatctcatatacagaccttggaaa
catgctgagggccagctctccttcatccagcattcccttataaacccggagatcttctgt
tttgctgactacccctgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gataatcgagaaattgccacatggaagagcctggatttgattgagtctctgttgcggttg
gcagaagtggggcagtatgagcaagttaagcagctcttcagtttccctatcaagcactgc
ccagatatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gaactcatctctacacttatgccaattttccttggcaaccaccccaactctgccatcatt
ttgcactatgcgtggcatggacagggccagtctccttcaatacgccaacttatcatgcat
gcgatggctgaatggtacatgagaggggagcagtatgaccaggcaaaattgtcccgtatt
cttgatgttgcccaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgaccttctta
aagagacgatgcccatctattttggggggccttgccccagagaaagaccagcccaaaagt
gctcagcttcctccagaaacactggcaactatgttggcctgcctacaagcttgtgctggg
agtgtttcacaggagctgtcagagaccatcctcactatggtagccaattgcagtaatgtc
atgaacaaggctagacagccaccacctggagtcatgccaaagggacgtccaccaagtgct
agcagcttggatgccatctctcctgtacagattgacccgcttgctgggatggcatctctt
agtttaggtggttcagctgttccacatacccagagtatgcaaggcttccctccaaatttg
ggttctgctttcagtacacctcagtcaccagcaaaagcatttcctcccctttctacccaa
aatcagacaactgctttcagtggcattggaggactctcttcacaacttccagtaggtggt
cttactacgggtagcctaactggtatagggactggggcccttggcctccctgcagtgaac
aacgatccattcgtgcaaaggaaactgagtacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgatgaggcaaacagctactttcagcgcatttataatcatccacca
caccccaccatgtctgtagatgaggtgttagaaatgctacagaggtttaaggactccaac
attaagcgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggagtaccgt
tttttcccccaatacccagacaaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttacatggcattgggtctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacctacaggagtacattgaatatgggcagcaatcccgagac
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggctcaggttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctccaccacccccaccactgtggcaaaaaccattacaatcacgcgaccaactgga
gtcagcttcaaaaaggatgtgccgccttccattaatacaaccaacattgataccttgcta
gtggcaacggatcagactgagagaattgtggagcccccagaaaatgttcaggaaaaaatt
gctttcatcttcaataatctgtctcaatcaaatatgacacagaaggttgaggagctgaag
gaaactgtgaaagaagagttcatgccttgggtttcacagtatcttgtgatgaagagagtc
agtattgagccaaattttcacagcctatactcaaatttccttgacactcttaagaatcca
gagtttaacaagatggttctgaatgaaacctacagaaatatcaaggtgctactgacatca
gataaagctgcagccaacttctctgaccgttcccttctgaagaaccttggccactggctg
ggaatgatcacactggctaaaaataaacccatcttgcacacggatttggatgtgaaatcg
ttacttctggaggcttatgttaaggggcaacaggagttgctttatgtagtgccatttgtt
gccaaagtcttagaatctagtgtcaggagtgtggttttcaggcctccaaacccctggacg
atggcaatcatgaacgttttagctgagctgcatcaagaacatgacttaaaactaaatctg
aaatttgagattgaggtgctctgcaagaaccttgcactagacatcaatgagctgaaacct
ggaaacctcctgaaagacaaggatcggttgaaaaatttggatgaacagctatctgctcca
aagaaggatgtaaaacagccagaggagctaccaccgatcaccacaaccactgcttctaca
accccagctactaacaccacttgtacagcatccgttcctccacaacctcagtacagttac
catgacatcaacgtctactctctgggagggctggctccgcacattactctaaatccgact
attccactgttccaggcccacccacagctaaagcagtgcgtgcgtcaagctatagagcgt
gcagtgcaagagcttgtccatccagtggtagatcggtccattaagattgccatgactacc
tgtgaacagatagtcaggaaggactttgcactggattcagaggagtcacgcatgcgtgta
gcagcacaccacatgatgcggaacctgactgctggtatggccatgattacctgcagggaa
cctctgatgatgagcattgctaccaacttgaagaacagttttgctactgcgctgcgggca
gcatccccacagcagagggagatgatggagcaggcagctgcacagttagctcaggataac
tgtgaattagcatgctgcttcattcagaagacagctgtggaaaaggcaggccctgaaatg
gacaagaggctggcaactgaatttgagctcagaaagcatgctagacaagagggtcgtcgg
tactgtgatcctgttgtattaacttaccaggctgaacggatgccagagcagatcagattg
aaggttggtggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtc
cccggcttcttgcctaccaatgatttaactcagcccacaggattcttggctcagcctatg
aagcaagcttgggctacagatgatgtagcacagatctatgataaatgtatggcagaactg
gaacaacacctgcaatccataccacataccctggccatgaacccacaagctcaagcctta
cgcagcctgttggaggctgtagcagtagctcgtaactcccgtgatgcgatagctgcgctt
ggactgctccagaaggctgttgagggcttactggatgccaccagtggtgcggatgctgac
ctcctgctccgctaccgtgagtgtcacctacttgtactaaaagctctgcaggatggccgt
gcttatgggtctccatggtgtaacaagcagatcaccagatgcttgattgaatgccgggat
gagtataagtacaatgtagaagctgtggagctgctaatccgcaatcaccttgttaccatg
cagcagtacgatcttcacttggcacagtcaatggagaatggcttgaactacatggcagtg
gcatttgccatgcagttggtgaggatcttgttggtggatgagaggagtgtagcccatgta
acagaggcagatctgttccacaccattgagactctgatgaggattaatgctcactccaga
gggaatgctccagaaggattaccccagttgatggaagtggtccgatccaactatgaagca
atgattgatcgtgctcatggaggccctaacttcatgatgcattctgggatctcccaagcc
tctgagtatgatgatccaccaggcctgagggagaaggcagagtatctactgagggaatgg
gtgaatctctaccattcagctgcagctggccgtgacagtaccaaagctttctctgcgttt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacggat
gacctgataactcggttctttcgtctttgcactgaaatgtgtgttgaaatcagctatcgt
gctcaggctgagcagcagcacaatcctgccgccaatcccaccatgatcagagccaagtgc
taccacaacctggatgcctttgtgcggcttatcgcactgctagtgaagcactctggggag
gcaaccaacactgtcacaaagatcaacctgctgaacaaggttcttggtatagtggtggga
gttctcctccaggaccatgatgttcggcagagtgaatttcagcagcttccttaccaccgc
attttcatcatgttgctgttagaattaaatgctcctgaacacgtgctggagaccatcaac
ttccagacccttacagccttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcgagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagctgctaattgatctcttc
aagtacttggctcctttccttagaaatgtggaactcactaaacctatgcaaattctctac
aagggcactctgcgtgtgttgctggtcttattgcatgatttcccagaattcctttgtgac
taccactatgggttctgtgatgtgatcccaccaaactgtatccaactaaggaatctgatc
ctgagtgccttcccacgtaacatgaggcttccagatcctttcactcccaacctaaaagtg
gacatgttaagtgagattaatattgcaccacggatactcaccaactttactggagtgatg
ccccctcagttcaaaaaagatttggattcctatctcaaaactcgctctcctgtcactttc
ctgtctgacttgcgcagcaatctacaggtatcaaatgaacctggcaatcgttacaacatc
cagctgattaatgcactagtgctctatgtaggcactcaggctattgcacatattcacaac
aaaggcagcacaccctctatgagcactatcacccattcagctcacatggacatcttccag
aacttggctgtggacctggacacagaaggtcggtacctcttcttgaatgcaattgccaat
cagctgcggtacccaaacagccatacgcactatttcagttgtaccatgctttacctattt
gcagaggccaatactgaggctatccaggaacagatcactagggtactgttggaacgactg
attgtaaataggcctcacccatggggtctcctcattaccttcattgagctgataaaaaat
ccagcgtttaaattttggaaccatgagtttgttcactgtgctccagaaattgagaagttg
tttcagtcagttgcacagtgctgcatggggcagaagcaggcacagcaagtgatggaaggg
actggtgccagttag
DBGET
integrated database retrieval system
