Caretta caretta (Loggerhead turtle): 125625606
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Entry
125625606 CDS
T09292
Symbol
SMG9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125625606 (SMG9)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125625606 (SMG9)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
DUF6079_1st
ABC_tran
URGCP_GTPase
GBP
Motif
Other DBs
NCBI-GeneID:
125625606
NCBI-ProteinID:
XP_048683837
LinkDB
All DBs
Position
22:complement(1861346..1870927)
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AA seq
514 aa
AA seq
DB search
MSDSGHSQPGLYGPDRRRRWNRDKELGPPGGPQSLSGPGRERDYGPWDRERREPAEEPVG
SVMQKTPIILAKPPAERSKLAPAPAPVPPATAPPPMEKPIVLMKSREEGKGPVGASEGAA
QLPTAAAKGEKEGQRPTQPVYQIQNRGMGSAASSSTMDPVAGQAKLLAPEKMKHSIKLVD
DQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMLMSLLSANQPEEDQRAYVFRTQSQEI
KERGGNQTSGIDFFITQERIIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSL
QIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESTGSSGADEGTEYYP
HVVFLQNKAKRENFCPRNLKQMHVVIDKIMMHSHLKYKGTLSMLECNIFPGLPYDYLDTE
VNLFLLPFADSDADDTFPRAAPGGGPLFSLLPGYKGHPSFQSLVAKLRSQIMSMARPQLS
HTILTEKNWFHYAARIWDGVKKSSALSEYSRLLA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactccgggcacagccagcccggcctgtacggccccgaccgccggcgccgctgg
aaccgcgacaaggagctgggccccccgggcggcccccagagcctgtcggggccgggccgg
gagcgtgactacggcccctgggaccgcgagcgccgggagcccgcagaggagccggtcggg
tccgtgatgcagaagacacccatcatcctggccaagccgcccgctgagaggtccaagctg
gcccctgccccagctccggtcccacctgccactgccccgccccccatggagaagcccatt
gtgctgatgaagtcgcgggaggaaggcaaaggcccagtgggggcatcggagggggctgcc
cagctccccacagctgctgccaagggggagaaggagggacagcgccccacgcaacccgtc
taccagatccagaaccggggcatgggatccgctgcgtctagcagcactatggaccccgtg
gcgggccaggcaaagctgctggccccggagaagatgaagcacagcatcaaactggtggac
gatcagatgaactggtgtgacagcgccatcgagtatctgctggaccagaccgatgtgctg
gtggtcggggtgctgggattacagggcaccggcaaatccatgctgatgtctctgctgtcg
gctaaccagcctgaagaagatcaaagggcctacgtgttccgcacccagagccaggagatc
aaggagcgcggggggaaccagaccagcggcatcgacttcttcatcacccaggagcgcatc
atcttcctcgacacccagccaattctcagcccttccatcctggaccatctcatcaacaac
gaccgcaagctgccccctgagtacaacctgccccacacttacgtggagatgcagtccctg
cagatcgcggccttcctcttcaccgtctgccacgtggtcatcgtggtgcaggactggttc
accgacctcagtctgtacaggttcctgcagacggccgagatggtgaaaccctccacgccc
tcccccagccacgagtccaccggctcctcgggcgccgacgagggcacggagtactatccc
catgtcgtctttctgcagaacaaggccaagcgggagaatttctgtccccggaacctgaag
cagatgcacgtggttatcgataaaatcatgatgcactcgcacctgaaatacaagggcact
ctctccatgctggagtgtaacatcttccctggcctgccctatgactacctggacacggag
gtgaatctcttcctgctgccgttcgcggacagtgacgccgacgacactttccccagagca
gctcctgggggcggccccctcttctccctgctgcccgggtacaaggggcaccccagcttc
cagtcgctcgtggccaagctgcgcagccagatcatgtctatggcacggccccagctctcc
cacaccatcctgacggagaagaactggttccactacgcggcccggatctgggacggagtg
aagaaatcctcggcgctttcggagtacagccgcctgctggcctga
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