Caretta caretta (Loggerhead turtle): 125644823
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Entry
125644823 CDS
T09292
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccay04040
]
125644823
Ion channels [BR:
ccay04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125644823
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FraC
Motif
Other DBs
NCBI-GeneID:
125644823
NCBI-ProteinID:
XP_048725328
LinkDB
All DBs
Position
11:42421312..42535961
Genome browser
AA seq
2009 aa
AA seq
DB search
MAQALLVPPGPDSFCYFTRESLAAIEKRATEEKAKKPKQDHTDDDDEDGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKTIFRFSATSALYILTPVNPVRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPEWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLQWPPDNSTFEVNITSYLNSTM
DVNGTFVNTTVSTFNWKEYIEDETHFYILEGQRDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQATAAVAAASVASRDLSGVG
GLGELLESSSEASKLSSKSAKERRNRRKKRRQKELSEAEDKGDVEKFPKSESEDSIRRKS
FRFSMEASRLTYEKRFTSPHQSLLSIRGSLFSPRRNSRTSIFSFRGRAKDIGSENDFADD
EHSTLEDSESRRESFFAPNRHGERRNSNISEASRSSRMVPALPPNGKMHSTVDCNGVVSL
VGGPSALTSPTGQLLPEGTTTETEIRKRRLSSYQISMEMLEDSTARQRAMSIASILTNTM
EELEESRHKCPPCWYRFANTFLIWDCWSPWLKVKHIVNLVVMDPFVDLAITICIVLNTLF
MAMEHYPMTEQFSSVLTVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSL
MELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKDCVCKIATDCVLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QAMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAIARIQKGID
YVKKKLREFVQKAFVRKQKALEEIKAFEDLNNKKDSCISNHTVVEISKDLNCLRDGNGTT
SGVGTGSSVEKYVVDENDYMSFINNPGLTVTVPMAIGESDFENLNTEEFSSESDIEESKE
KLNASSSSEGSTVDIAPPGEGEQAEIEPEEALEPIACFTKGCVQKFTCCQVSIEDGKGKI
WWNLRKTCYSIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIF
ILEMLLKWVAYGFQMYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKSLRTLRALRP
LRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGE
MFDISDVDNYTQCEDLIKKNESARWKNVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVD
SRDLLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEE
QKKYYNAMKKLGSKKPQKPIPRPVNKFQGMVFDFVTKQVFDISIMILICLNMVTMMIETD
DQSDEMETILHRINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAK
VIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFI
YAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGEPDCDP
YKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSED
DFEMFYEVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVSGDRIH
CLDILFAFTKRVLGESDEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVSATVIQ
RAYRCYILKQKVKKVSCVYNKDKTKGDGLPVKDMITDKLNENSTPEKTYESSSTTSPPSY
DSVTKPDKEKYEKDKVEKDYKSKNVRQSK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcattgctggtaccaccaggacctgacagcttctgctattttactagagaa
tctctcgcagctattgaaaagcgtgccacagaagaaaaagctaaaaaacccaaacaagat
catacagatgacgatgatgaagatggcccaaagccaaatagtgacttggaagcaggaaag
acactgccatttatttatggtgacatacctccgggaatggtgtccgagcccctggaggac
ctggacccatattatatcaataaaaaaactttcatagtactgaataaaggaaagacaatt
ttccgtttcagtgccacatctgccttgtacattttaactcctgtcaaccctgttagaaaa
attgctattaagattttggtacattcattattcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggagtggacaaagaatgtagagtac
acgttcactggaatatatacctttgaatcgcttataaaaattcttgcaaggggcttctgt
ttagaaggttttactttccttcgtgacccatggaattggcttgacttcagtgtcattttg
atggcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtattgagagctttgaaaactatttctgtaatcccaggcttgaagactattgtaggagcc
cttattcagtctgtgaagaagctctcggatgtaatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggcaacttgaggcataaatgcttgcag
tggcctccagacaattccacttttgaagtaaacattacttcctacttgaatagcacaatg
gacgtaaatggtacctttgttaatacaactgtgagcacgtttaactggaaggagtacatt
gaggatgaaactcatttttacattttggaaggacaaagagatgccctactttgtggtaat
agctctgatgcaggtcaatgtccagaaggatatatatgtgtgaaagctggtagaaacccc
aattatggctacacaagctttgacacattcagttgggcattcttgtcactctttcggctg
atgactcaggacttctgggaaaatctttatcagttgacgctacgagctgctggcaaaaca
tacatgatattttttgttctggtgatttttttgggctctttctatctggtgaatttgatc
ctggctgttgttgctatggcctatgaagaacagaatcaagcaaccctggaagaagcagag
cagaaagaggcagaatttcagcagatgcttgaacagctaaaaaaacaacaagaagaagct
caggcaacagcagcagtagcagcagcgtcagttgcgtcaagagatttgagtggagtaggg
ggattaggggagctcttggaaagttcctcagaagcatcgaagttgagctcaaagagtgct
aaagaaaggagaaacagaaggaagaaaagaagacagaaggaactgtctgaagcagaggac
aaaggagatgttgaaaagttccccaaatctgaatcagaggacagtatcagaaggaaaagt
ttccgattctcgatggaagcgagtcgactgacatatgaaaagaggttcacttccccccac
cagtctttgctgagtattcgtggctccctgttttccccaaggcgcaacagcagaacgagc
attttcagcttcagaggtcgagcaaaagatataggatcagaaaatgacttcgctgatgat
gaacacagcactcttgaagacagtgagagcagaagagagtctttctttgctccaaacaga
catggtgaaagacgcaacagtaacattagtgaagccagtaggtcatccaggatggtacca
gcgcttccaccaaatgggaagatgcacagcactgtagattgcaatggggtggtttctttg
gttggaggaccttcagctctcacttcgcctactggacaacttctcccagagggcaccact
acagaaacagaaataagaaaaagaagattgagttcttatcaaatttccatggaaatgttg
gaagattctactgcaagacaaagagcaatgagtatagccagcatactcacaaacacaatg
gaagagctcgaagaatccagacacaaatgtccaccgtgctggtacagatttgcaaacacc
ttcttgatctgggactgctggagcccatggttaaaagtaaaacatatagtcaatttggtt
gtgatggatccatttgttgatcttgctattactatctgcattgttctcaacacattgttt
atggccatggaacactacccaatgacagaacagttcagcagtgtgctgactgtgggaaac
ctggtatttactgggatcttcacagcagaaatggttttaaagataattgccatggaccct
tattattatttccaagaaggctggaatatttttgatggtattattgtcagccttagttta
atggaacttggtcttgcaaatgttgaaggattatcagttctccgatcattcagattgctc
cgagtattcaagttggcaaaatcttggccaacactgaatatgctgataaagattattggt
aactcagtgggggctttgggaaatttgaccttggtgctggccatcattgtcttcattttc
gctgtggttggtatgcagctgtttggtaaaagctacaaagactgtgtctgcaagattgct
acagactgtgtacttccacgctggcacatgcatgactttttccactcttttttgattgta
ttccgagtgctgtgtggagaatggatagagactatgtgggactgtatggaggttgcaggc
caagccatgtgccttattgttttcatgctggtcatggtcattggaaaccttgtggtattg
aacctgtttctggccttgctactgagttcatttagttcagataaccttgctgctacagat
gatgataatgaaatgaataatctccagattgccattgcaaggattcagaagggaatagat
tatgtgaaaaaaaaattacgggaattcgtccaaaaagcctttgttagaaagcaaaaagca
ttagaggaaatcaaagcatttgaagatctaaacaacaagaaagacagctgcatttccaac
catactgtcgttgaaataagcaaagatcttaattgtcttagagatgggaatggaactacc
agtggtgtaggaacaggcagcagtgtggaaaaatatgtagttgatgaaaatgattatatg
tctttcataaacaatccgggccttactgtgacagtacctatggctattggagaatcagat
tttgaaaatttaaacacagaagagtttagcagtgagtcggatatagaagaaagcaaagag
aagctaaatgcatccagctcatccgaaggcagcacagttgatattgcccctcctggagag
ggcgaacaagctgagattgaacctgaagaagctcttgaaccaatagcctgttttacaaaa
ggttgtgtgcagaagttcacatgttgtcaagtaagtatagaagatggcaaaggcaaaatc
tggtggaatcttaggaaaacctgctacagcatagttgaacacaactggtttgagacattc
attgtcttcatgattcttctgagcagtggcgctctggcttttgaagacatatatatagag
cagcgcaagactatcaagaccatgctggaatatgctgacaaggttttcacatacatcttt
attctggaaatgcttctgaaatgggttgcctatggttttcaaatgtatttcactaatgcc
tggtgctggctggacttcttgattgttgatgtgtcgttggttagtctaattgccaatgcc
ttgggctattccgaacttggtgccattaaatcgcttaggacactaagagctttgagacct
ctaagagccttgtcacgatttgaagggatgagggtggttgttaatgccctgataggagca
attccatccatcatgaatgtgctactggtttgtctgatattctggctaatcttcagcatc
atgggagtaaatctgtttgctggcaagttctaccactgtgttaacacaacaactggtgag
atgtttgatatcagcgatgttgacaattatactcaatgcgaggacctcataaaaaagaat
gaaagtgcccgatggaaaaatgtgaaagtaaacttcgataatgtaggcgctgggtatctt
gcactgcttcaagtagctacatttaaaggatggatggatattatgtatgcagctgttgat
tcacgagatctactagatcagcctaagtatgaggacaacctgtacatgtatctttacttt
gtcatctttatcatcttcggatcattcttcaccttgaaccttttcattggtgtcatcata
gacaacttcaatcaacaaaaaaagaagtttggaggtcaagatatatttatgacagaagaa
cagaagaaatactacaatgcaatgaaaaaactggggtccaagaaaccacaaaaacctata
cctaggccagtgaacaaattccaaggcatggtctttgattttgtaacaaaacaagtattt
gacatcagcatcatgattcttatctgccttaacatggtcaccatgatgatagaaacagat
gaccagagtgatgaaatggaaactattttacacaggataaacctggtattcattgtcctt
ttcactggagaatgtgtcctgaaattgatttcactccgttattactacttcaccataggc
tggaacatttttgattttgtggttgtcattctttccatcgtgggtatgtttctagctaag
gtgattgaaaaatattttgtgtcccctaccttgttcagagttatccgactcgccagaatt
ggtcgaatcctgcgtctcattaagggagctaaagggatccgtactttgctttttgctttg
atgatgtctcttcctgctttgtttaacattggtctcctgcttttcctggtcatgtttatc
tatgctatatttggaatgtccaactttgcctacgttaagagggaagctgggattgatgac
atgttcaactttgaaacttttggcaacagcatgatctgcctatttcaaattaccacatca
gctggttgggatggtttgttagcaccaattctgaacagtggagaaccagactgtgaccct
tacaaagatcacccaggaagctctgttaaaggagactgtggtaacccttcagttgggatt
ttcttttttgtcagttatattatcatctcatttctagttgtagtaaacatgtatattgct
gttattttggagaacttcagtgttgctacagaagaaagtgccgagcccttgagtgaggat
gactttgagatgttctatgaggtttgggaaaagtttgatccagatgcaacccagtttata
gaatacagtaaactatctgattttgcagcttcactggatcctcctcttcttatagcaaaa
ccaaacaaagttcagcttattgcaatggatctgcccatggtaagtggtgacagaattcac
tgtcttgacatcttgtttgcttttacaaagcgtgttttgggagaaagtgatgagatggat
gcacttcgaatacaaatggaagaccggtttatggcagccaatccttctaaagtctcctat
gagccaattacaactacattaaaaagaaaacaagaggaggtttctgctactgttattcag
cgtgcttacagatgttatattttaaagcaaaaagttaaaaaagtctcctgtgtgtataac
aaagataaaaccaaaggggatggcctacctgtcaaagatatgattactgataaactcaat
gaaaactccactccagaaaaaacatatgagagctcctctacaacctctccaccttcctat
gatagtgttacaaagccagacaaagagaaatatgaaaaagataaagtagaaaaagactat
aaaagtaaaaatgttaggcaaagtaaataa
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