Couchioplanes caeruleus: COUCH_05325
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Entry
COUCH_05325 CDS
T08133
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
ccaz
Couchioplanes caeruleus
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaz03021
]
COUCH_05325
Transcription machinery [BR:
ccaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COUCH_05325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
HTH_23
HTH_10
MarR
HTH_Tnp_ISL3
DUF7343
DUF134
GerE
HTH_24
NirdL-like_HTH
HTH_3
Sigma70_ECF
HTH_AraC
HTH_31
HTH_7
Motif
Other DBs
NCBI-ProteinID:
UQU65740
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All DBs
Position
1119480..1120289
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AA seq
269 aa
AA seq
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MTVIAVPAHDADTRTDASASTDSASEFITAMASLPAGHPSRPALRDRAIEAWLPLARHLA
NRYSGRGEPTDDLYQVAVVGLIKAVDRFELDRGVEFAGFAIPTIVGELKRHFRDRTWSIR
VPRRLQELRLAITGANSTLSHTLGRSPTVTDIAEHLGITEEEVVEGLEGARAYTAASLST
PVNADGSTELGDTIGGMDDGFELTELRVALGPALAMLSEREQRIVSLRFYGNMTQSQIAE
QVGISQMHVSRLLTKALAKLRDQLDGFAA
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcatcgccgttcccgctcacgacgccgacacccgcacggacgcgtcggcgagc
acggacagcgccagtgagttcatcactgcgatggcgagcctgcccgcggggcacccgtcg
cgcccggctctgcgtgaccgcgcgatcgaggcgtggctgccgctggcccggcacctggcc
aaccgttactccggccggggcgagcccaccgacgacttgtaccaggtggccgtggtcggg
ctcatcaaggccgtcgaccgcttcgagctggaccgcggcgtggagttcgccggtttcgcg
atccccacgatcgtcggtgagctgaagcggcacttccgcgaccgcacctggtcgatccgg
gtgccgcgtcggctgcaggagctgcggctggccatcacgggcgccaacagcacgctgagc
cacacgctgggccggtcgcccacggtgacggacatcgccgagcacctgggtatcaccgag
gaagaggtcgtcgaggggctggagggcgcgcgggcgtacaccgcggcgagcctctccacg
ccggtcaacgccgacggcagcaccgagctgggcgacacgatcggcggcatggacgacggc
ttcgagctcaccgagctgcgggtggcgctgggcccggcgctggccatgctcagcgagcgc
gagcagcggatcgtcagcctgcgcttctacggcaacatgacccagtcgcagatcgccgag
caggtcggcatctcccagatgcacgtgtcgcgcctgctcaccaaggcgctcgcgaagctc
cgcgaccagctcgacggcttcgccgcctga
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